Gene Jann_3172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_3172 
Symbol 
ID3935643 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand
Start bp3211093 
End bp3211995 
Gene Length903 bp 
Protein Length300 aa 
Translation table11 
GC content62% 
IMG OID637905543 
ProductHflC protein 
Protein accessionYP_511114 
Protein GI89055663 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0330] Membrane protease subunits, stomatin/prohibitin homologs 
TIGRFAM ID[TIGR01932] HflC protein 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCCGTA TAACTTATCT TATCCCCGTT GTCGTCCTCG GTATCGTGCT TCTGTCTTCC 
TCCATCTTCG TGGTGGATGA ACGGCAGCGC GCGCTGGTCC TGCAGTTTGG TCAGATCCGT
CAGGTCATCG ACGAGCCCGG CCTGAACTTC AAAATCCCGT TCATCCAGAA CGTCATCTAC
TACGAGGACC GCATCCTGTC GCTTGATACT GCCGCGACAG AGGTCACGCC GTCCGATGAC
CGTCGTTTGG TCGTGGATGC CTTCGCGCGC TACCGCATCG TCGATACCGA GCAGTTTAAC
CGGGCCGTGG GTGGCGGTGG TATTCGCCGC GCCGACGACC TGATCGAAGC CATTCTGACG
GACCGGATCC GGGCCGTTCT GGGTGCCGAT GGTGTGACCT CCAACACCAT CCTTTCAGAA
GAACGGGCCG GTCTGATGGT GCAGATCACG GCCCAGGCAC GGGCCCGGGC GGAATCGCTT
GGGGTCCGGG TTCTTGATGT TCGTCTGAAG CAAACGAACC TTCCGGCTCA GAACCTCGAT
GCGACCTTTG CCCGGATGCG GGCGGAGCGT GAACGGGAGG CCGCAGACGA GATCGCCCGT
GGTGAAGAGG CCGCGCAGCG GATCCGAGCC ACAGCGGATC GTACGGTGGT GGAGCTTGTC
TCCGACGCCG CGCGGGAGGC CGAGATCACT CGAGGTGAGG CGGACGCCGA GCGGACGCGG
ATCTTCGCGG AGGCGTTCGG CCAGGACACC GAGTTCTTCG ACTTCACCCG TTCGCTTACG
GCTTACGAAC GCGCGCTGGG TGAAAACTCC AGCTTCGTGA TCAGCCCCGA CAGCGAGTTC
TTCGGCTACT TCGATGGCTC GGCCCTCGGG GGCGGCAATT CGCTGGCACC TGCCGGGCAA
TAA
 
Protein sequence
MRRITYLIPV VVLGIVLLSS SIFVVDERQR ALVLQFGQIR QVIDEPGLNF KIPFIQNVIY 
YEDRILSLDT AATEVTPSDD RRLVVDAFAR YRIVDTEQFN RAVGGGGIRR ADDLIEAILT
DRIRAVLGAD GVTSNTILSE ERAGLMVQIT AQARARAESL GVRVLDVRLK QTNLPAQNLD
ATFARMRAER EREAADEIAR GEEAAQRIRA TADRTVVELV SDAAREAEIT RGEADAERTR
IFAEAFGQDT EFFDFTRSLT AYERALGENS SFVISPDSEF FGYFDGSALG GGNSLAPAGQ