| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3160 |
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| Symbol | |
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| ID | 3935631 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 3199506 |
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| End bp | 3202229 |
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| Gene Length | 2724 bp |
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| Protein Length | 907 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637905531 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_511102 |
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| Protein GI | 89055651 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.973259 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGTTG TTGTTGTCGA ATCCCCGGCT AAGGCCAAGA CAATCAACAA GTATTTAGGC
AGTGATTACA CGGTCCTCGC CTCCTACGGA CACGTCCGGG ACCTGCCGTC CAAGGATGGA
TCTGTCGACC CCGAAGAGGG GTTCTTCATG AAGTGGGAAA TCGGCAGTGA TTCCAAAAAA
CACGTCAAAG CGATTGTTGA TGCGTTAAAG GATGACAATT CCCTGATCCT CGCGACCGAC
CCCGACCGGG AGGGCGAAGC GATCTCCTGG CACCTGCAAG AGGCACTGAC CTCTCGCAAG
GCGATCAAGA CGGACACGCC GGTCAGCCGC GTGACCTTCA ACGCGATCAC CAAGGATGCC
GTGACCAAAG CCATGGCCGA GCCGCGTCAG GTCGATATGG AGCTGGTGGA GGCCTATCTG
GCCCGCCGCG CACTTGATTA TCTGGTGGGC TTCAACCTGT CGCCGGTGTT GTGGCGCAAA
CTGCCCGGCG CCAAGTCCGC GGGCCGTGTG CAATCGGTTT GCCTGCGCCT GGTGGTCGAG
CGCGAGATGG AGATTGAGGC GTTTCGCCCC CGCGAATACT GGTCCGTGCG CGCCGTATTG
GAAACGCCCC GCGGTCAAAC GATTGAAGCC CGCCTGACCG TTCTGGGCGG CAAAAAGCTG
GACCGCTACG ACCTGCCCTC CGCCGCGGAG GCCGGATTGG CCGTTCAGGC CGTCTCTTCG
CGCAAGTTGA GTGTTTCGGA TGTGGAAGCG AAGCCCGCCA ACCGCAATCC GTCCCCGCCC
TTCATGACCT CCACCCTCCA GCAGGAAGCC TCGCGCAAGT TGGGGATGGG CGCGAAACAG
GCGATGAGCA CGGCGCAGCG CCTCTATGAG GCGGGCCACA TCACCTATAT GCGGACCGAC
GGCATCGACA TGGCGCCTGA GGCTGTAGAA GACGCACGCG GCGCGATCAA AACCCGGTAC
GGGGTCGACT ACGTGCCCGG CAAGCCCCGG ATTTACAAGA ATAAAGCCAA GAACGCGCAG
GAAGCCCACG AATGCGTGCG CCCCACGGAC ATGTCCAAGG CGGCCAACGA TCTGAAGCTG
TCCGAGGATG ATCAACGCAA GCTCTACGAC CTGATTTGGA AGCGGACCAT CGCCAGCCAG
ATGGAGGCGG CGCGACTGGA GCGGACAACG GTGACCATCG CGTCCGACGA CCGCGAGGTG
GAACTGCGCG CAACCGGTCA GGTGATGCTG TTTGACGGGT TTCTCAAAGT GTATGAGGAA
GGCCGCGACG ACGCAGGCGA TGACGAGGAC AGCAAGCGCC TGCCGCAGGT CAGCGCAGGC
GATCCACTCA AGCCAAGCGC CGATGCAATG GCCGATGACT ACGCCAAATA TTCAGGCGAT
GATGTGGTGG AAGATGACGG GAACGGCGAC GTCCGCCGCT CCAAATCCGC GATCCTGTCG
CGCGAAGGGG CCGTTCTGGG CCAGCAACAC CACACGGCCC CCCCGCCCCG CTATACCGAG
GCGACCCTGG TCAAACGGAT GGAGGAACTG GGCATCGGGC GTCCGTCCAC CTATGCCTCG
ATCATGGATA CGATCCAGAA CCGTGGCTAC GTGATCAAGG ACAAGGGCCG GCTGATCCCC
GAGGACAAGG GCCGCCTTGT GACGGTATTT TTGTCCAATT ATTTCAACCG CTACGTCCAA
TATGACTTCA CCGCCGACCT AGAACAGCAA CTCGATGAAG TGAGTGCCGG CGACCGCCAC
TACAAGGACG TGTTGGACCG GTTCTGGCGC GATTTCCGGG CTGCGATCGA CGAGACATCT
GATCTGCGCA TCGGCGAGGT GCTCGACAAG ATCAATGAGG TCTTGGAGCC GCACCTCTTC
CCCGATCCGG GCGACGGCAC CGATCCGCGC CTCTGCCCCA ATTGCGGCGT GGGGCGGCTG
TCCATGCGCA CAGCACGGGC GGGCGGCGCT TTCATCGGCT GCTCCGCCTA TCCCGAATGC
CGTTACACCC GCCCCTTCGG CCCACCAGAC CCGGAGGCCG AAGCATCGGC GATTCCACCC
GACGGCAAGC TGTTGGGCGA AGACCAGGGC GACGAAATCC GCATTTTCAA GGGCCGGTTC
GGCCCCTACG TGCAGCGCGG CGCGATGACG GAAGAGAACA AGAAGCCCCC TCGCCAGTCG
ATCCCAAAGG ACTGGACCCC GGAGGAGCTG GACCTGGAAC GCGCGCTGAT GCTGCTGTCG
CTGCCCCGCC AAATCGGCCC ACACCCCGAA GATGGCATCA TGGTCTGGTC CAATATCGGG
CGCTATGGCC CCTATTTGAA GCACGCCGAA AGCACGTCGG ACCGGGGTGG CACCAATGCC
AATCTCGACG GCCTGGACGA GGTCTTTACC GTCGGCATGA ACCGCGCGGT GCAGCTTCTG
GCTGAGAAAG TCGCCTCCCG TGGCGGACGT GGGCAAGCGG CCAAACCGCT GCGCGAATTG
GGCGAACACC CCGATGCGGG CGGCCCGGTC AATGTCATGA AGGGCAAGTA CGGACCTTAT
GTGAAGTGGG ACAAGGTCAA CGCCACGATC CCGGAAGCCA TTGATCCAGA AGCGATTACC
ATGGATCAAG CGGTGCAGTT GATTGAGGAA CGCGCCGCAA AATCCGGCAA GAAAAAGCCC
GCAGCTAAGA AGAAAACGAC CGCCAAGAAA CCGGCCGCGA AAAAGAAGCC TGCGGCAAAG
AAAACGGCCA AATCCGCAGA TTAG
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| Protein sequence | MPVVVVESPA KAKTINKYLG SDYTVLASYG HVRDLPSKDG SVDPEEGFFM KWEIGSDSKK
HVKAIVDALK DDNSLILATD PDREGEAISW HLQEALTSRK AIKTDTPVSR VTFNAITKDA
VTKAMAEPRQ VDMELVEAYL ARRALDYLVG FNLSPVLWRK LPGAKSAGRV QSVCLRLVVE
REMEIEAFRP REYWSVRAVL ETPRGQTIEA RLTVLGGKKL DRYDLPSAAE AGLAVQAVSS
RKLSVSDVEA KPANRNPSPP FMTSTLQQEA SRKLGMGAKQ AMSTAQRLYE AGHITYMRTD
GIDMAPEAVE DARGAIKTRY GVDYVPGKPR IYKNKAKNAQ EAHECVRPTD MSKAANDLKL
SEDDQRKLYD LIWKRTIASQ MEAARLERTT VTIASDDREV ELRATGQVML FDGFLKVYEE
GRDDAGDDED SKRLPQVSAG DPLKPSADAM ADDYAKYSGD DVVEDDGNGD VRRSKSAILS
REGAVLGQQH HTAPPPRYTE ATLVKRMEEL GIGRPSTYAS IMDTIQNRGY VIKDKGRLIP
EDKGRLVTVF LSNYFNRYVQ YDFTADLEQQ LDEVSAGDRH YKDVLDRFWR DFRAAIDETS
DLRIGEVLDK INEVLEPHLF PDPGDGTDPR LCPNCGVGRL SMRTARAGGA FIGCSAYPEC
RYTRPFGPPD PEAEASAIPP DGKLLGEDQG DEIRIFKGRF GPYVQRGAMT EENKKPPRQS
IPKDWTPEEL DLERALMLLS LPRQIGPHPE DGIMVWSNIG RYGPYLKHAE STSDRGGTNA
NLDGLDEVFT VGMNRAVQLL AEKVASRGGR GQAAKPLREL GEHPDAGGPV NVMKGKYGPY
VKWDKVNATI PEAIDPEAIT MDQAVQLIEE RAAKSGKKKP AAKKKTTAKK PAAKKKPAAK
KTAKSAD
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