| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3087 |
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| Symbol | |
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| ID | 3935558 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 3121307 |
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| End bp | 3122338 |
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| Gene Length | 1032 bp |
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| Protein Length | 343 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637905458 |
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| Product | periplasmic binding protein/LacI transcriptional regulator |
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| Protein accession | YP_511029 |
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| Protein GI | 89055578 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.154884 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.401469 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGTT TCATATTGAC AGATCACAGC GGGTCTGACT TCCTGACCCG TGCCAAAGGT
CCACGCCGGG AGGGCGCGAC CAAGGCACCA AATATGAATT GGGAGGCTCT TATGAAGCTC
TTGAAAAACA CCGCCGCGGC GGTGACCGCT CTCGCTTTGT CTGTAGGTAT GGCGGCAGCC
CAGGATCAAC CGACCGTTGG CCTGATTATG AAGTCGCTTG CCAACGAATT CTTCCAGAAC
ATGATGGTTG GGGCGGAAGC CCATGCCGAA GAACGCGGCG ATTACGAATT GCTGGCCGTC
GGAATGCAGA ACGAAACCGA CTTCGAGTCG CAGATCAACG CGGTGGAGAA CTTCATCACC
CAGGGCGTTG ATGCCATCGT TGTCGCCCCG GCGGATTCGC GCGCCATGGT ACGGCCCCTG
CGCCGCGCGA TGGAGGCAGG CATCACCGTG ATCAACTTCG ACGTGGCGCT GGACACCGGC
GCGATGGAAC AGCAAGGCAT TGAGCTTGCC TTTGTTGGGC CCGACAACCG GATGGGTGCA
GAGATGGCGG GCAACGCCCT TGGGGAAGCT CTTGGCGAAG GCGGGCGTGT TGTCATCATC
GAAGGCAACC CGGGCGCGGA TAACGCAACT CAGCGGCGCT TGGGGTTTGA AGATGCAATT
GCCACCCACG GTCTTGAACT TCTCGAAAGC CGCACCGCCC ATTGGGAAAC GGAAGAAGCC
AATCAGGTGT TCGCTGCGAT GCTGACGGCG CATCCGGATC TACAAGGTGT GATGGCGGCA
AACGATTCGA TGGCGATCGG TGTGATCGAA GCGCTGGATG CCGCGGGCCG CGATGACATT
CTTGTCGTTG GCTTCGACGC CGTCCCCGCC GTTCTGCCAA TGATAGAAGA TGGCCGGATG
TTGGCCACCG TGGATCAGTT CGGGCAGGCC ATGGCAGCCA ACGCCATCGA CCTGGCGCTG
GAGGTGCTTG AAACGGGCGT GGATCTTGAA GGTTGGGTCC GCACGCCGAT CGAGCTTGTG
ACAGCCAACT AA
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| Protein sequence | MKRFILTDHS GSDFLTRAKG PRREGATKAP NMNWEALMKL LKNTAAAVTA LALSVGMAAA
QDQPTVGLIM KSLANEFFQN MMVGAEAHAE ERGDYELLAV GMQNETDFES QINAVENFIT
QGVDAIVVAP ADSRAMVRPL RRAMEAGITV INFDVALDTG AMEQQGIELA FVGPDNRMGA
EMAGNALGEA LGEGGRVVII EGNPGADNAT QRRLGFEDAI ATHGLELLES RTAHWETEEA
NQVFAAMLTA HPDLQGVMAA NDSMAIGVIE ALDAAGRDDI LVVGFDAVPA VLPMIEDGRM
LATVDQFGQA MAANAIDLAL EVLETGVDLE GWVRTPIELV TAN
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