| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3076 |
|---|
| Symbol | |
|---|
| ID | 3935547 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 3109517 |
|---|
| End bp | 3110572 |
|---|
| Gene Length | 1056 bp |
|---|
| Protein Length | 351 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637905447 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_511018 |
|---|
| Protein GI | 89055567 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0574821 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATATTC GCAAGAACCT GACCGCCAGT GTCAGCATCG CGTCCATGGT GATGGCCAGT
GCGGCACCCG CCTTTGCGGA CGGTGAATTG AATCTGCTGA CCTGGGAAGG CTACGCCGAT
CCAAGCTTCA TTGACGCGTT CACGGAGGCG ACGGGCTGCA CCGTCAGCGC GACCTATGTC
GGATCAAACG ACGACTTCGC ACCGCGTCTG GCTGCTGGCG GAGGTGTGTT TGACCTTATC
TCGCCGTCGA TTGATACAAC CGCGCCCCTG ATCGCTGCGG GTTTCGTCGA GGCCATTGAT
ACCGACCGGA TCGAGCGCTT TGATGAGATC TATGACGCAT TCCGAACGGC GGACGGCATC
AACGCAGACG GCCAGATCTA CGGGCTGCCG TATGCGTGGG GCGCGATCGT GTTCATGTAT
CGCCCGGACA TGTTTGACGA GCCGCCGACC TCCATTGCCG ATCTCTGGGA TCCTGCATTG
GAAGGCCGCG TCTCGATCTG GGACGACAAG AGCGCCCTCT ATGTCGCGGC GCGCCGAAAC
GGTGACATGG ACATCTACAA CCTGACGGAC GCGCAGATTG CCGCCGCGCA GGAAAGCCTG
CTGGAGCAGC GCCCCAACAT CCGGCGCTAT TGGTCGACGG CCGGTGAACT GGTTGATCTG
TATCTGTCCG GTGAGGTCTG GGTCTCGAAC ACCTGGGCGG GCTATCAATC TGCGCTGCTT
GAGGCCGAGG GTATGGAAGT CGTTGAATTC ATCCCGGAAG AGAACGCCGA AGGCTGGATG
GACAGCTGGA TGATCGTGGC CGACAGCCCC AACCAGGATT GCGCCTACGA GTTCCTGAAC
ATGTCGATCA GTGAGCTGGG ACAATGCGGA GTGGCCAACG TGAACGGCTA CTCGGTGACC
AACCCCGTCG CCGCACGGAA TTGCATGACC GATGAACAAT TCGCGTCCCT GCATCAGGAC
GATCCCGGCT ACATTGACTC GCTTCTGCTT TGGGAAAACC TCGGGCCGCG ACTGGGCGAT
TACGTCTCAG CCTGGAACGC GGTGAAGGCT CAGTGA
|
|---|
| Protein sequence | MNIRKNLTAS VSIASMVMAS AAPAFADGEL NLLTWEGYAD PSFIDAFTEA TGCTVSATYV
GSNDDFAPRL AAGGGVFDLI SPSIDTTAPL IAAGFVEAID TDRIERFDEI YDAFRTADGI
NADGQIYGLP YAWGAIVFMY RPDMFDEPPT SIADLWDPAL EGRVSIWDDK SALYVAARRN
GDMDIYNLTD AQIAAAQESL LEQRPNIRRY WSTAGELVDL YLSGEVWVSN TWAGYQSALL
EAEGMEVVEF IPEENAEGWM DSWMIVADSP NQDCAYEFLN MSISELGQCG VANVNGYSVT
NPVAARNCMT DEQFASLHQD DPGYIDSLLL WENLGPRLGD YVSAWNAVKA Q
|
|---|
| |