Gene Jann_3054 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_3054 
Symbol 
ID3935525 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand
Start bp3085591 
End bp3086577 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content62% 
IMG OID637905425 
Productoligopeptide/dipeptide ABC transporter, ATP-binding protein-like 
Protein accessionYP_510996 
Protein GI89055545 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4608] ABC-type oligopeptide transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.150585 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGATG ATCCGCTTCT GAGCGTCGAA AGCCTCGATG TAACCTTCGA TATTCCCAAA 
CGCGGCGCGA TGCCCTGGAC AGCGCCGAAC AAACTGCAAG CCATCAGTCA GGCCAGCCTG
ACAATTCATC GTGGTGAGAC TCTGGGGCTG GTAGGCGAAA GCGGATCGGG CAAATCGACG
CTGGCCCGTG CGGTTATCGG CACCGTCCCC GCCTCCAGCG GTCGTGTGCT GTGGAAAGGG
CAGGACCTGA CAGGCCTGTC CGCCACGGAT CGCCGCGCCC ATGGCCGACA TGTCCAGATG
ATCTTCCAGG ATCCCCTCGC CGCGTTGAAC CCGCGCATGA ACCTCGGTCA GATCGTGGCC
GAGCCGCTTC TGACCCATCG CCCTGATACC GACGCCGCCA CGCGCCAACG TCTGGTCGGC
GAGATGCTGG AACGAGTCGG CTTGTTGCCG AATCTGCAAA ACCGCTACCC GCACGAATTT
TCCGGCGGGC AATGCCAACG GATCGGCATC GCCCGGGCGT TGATCACTGA GCCGGAACTG
GTCATCTGCG ATGAGCCGGT CAGCGCGCTC GACGTTTCGG TGCAGGCCCA AGTGGTGAAC
CTGCTGGCGG AACTGCAGCA AGAGATGGGG CTGAGCCTTC TGTTCATCGC CCATGATCTG
TCGGTGGTCC GCCACATCTC CAACCGGATC GCCGTGCTGT ATCTTGGCCG ACTGGTCGAG
GTCGGAACAG CCGAGCAGGT CGTTGGCACC CCCGCGCATC CCTATACGCA AGCCCTGATC
GCATCGGTCC CGATCCCGGA CCCGCCAAAG GAAAAGGCGC GCCACCGTCC AATTCTTGAC
GGAGAACTCC CGTCACCGAT TGATCCCCCC TCCGGCTGCG TCTTTCGCAC CAGATGCCCC
ATAGCCAAAG CGGATTGCGC CGTAGCACGC CCCGAAATGC GGATGGTCGA CGCGGCTCAT
TCCGTTGCCT GCCCCTACCA AAGCTAG
 
Protein sequence
MKDDPLLSVE SLDVTFDIPK RGAMPWTAPN KLQAISQASL TIHRGETLGL VGESGSGKST 
LARAVIGTVP ASSGRVLWKG QDLTGLSATD RRAHGRHVQM IFQDPLAALN PRMNLGQIVA
EPLLTHRPDT DAATRQRLVG EMLERVGLLP NLQNRYPHEF SGGQCQRIGI ARALITEPEL
VICDEPVSAL DVSVQAQVVN LLAELQQEMG LSLLFIAHDL SVVRHISNRI AVLYLGRLVE
VGTAEQVVGT PAHPYTQALI ASVPIPDPPK EKARHRPILD GELPSPIDPP SGCVFRTRCP
IAKADCAVAR PEMRMVDAAH SVACPYQS