| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3050 |
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| Symbol | |
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| ID | 3935521 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 3081031 |
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| End bp | 3082650 |
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| Gene Length | 1620 bp |
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| Protein Length | 539 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637905421 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_510992 |
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| Protein GI | 89055541 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4166] ABC-type oligopeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.423075 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACGTC ACGCCCTACT TGCTGCCACA AGCGCGCTTG TACTCGCCCT GCCCGCCTAT
GCGCAGGAAA CGCACCCTGA AACTGGTGAA GCGCTGGCTG CCAATCAGGA TTTTTCCTAT
CGCCTGCTGG ATCAGTTTCC ATCGCTCGAC CCGCAGCTGA TTGAGGAAAC CGCGGGCGGA
CACGTCGGGC GGCAGTTGTT CGAAGGGCTC TTGACACAAA ACGCGGACGG GTCCCTGCGC
CCGGGTGTGG CAACAGAATG GTCAAGCGAC GACAACCAGA CATGGACTTT TACGCTGCGC
GACGATGCGC GCTGGTCAAA CGGCGATCCG GTCACAGCCA ATGACTTCGT TTATGCTTGG
CGTCGCGCCG CTGATCCGGT GACCGCATCC GAGTACTCTT GGTACGTCGA GCTGACACAG
ATGACCAACG CGGCCGAAAT CATCGCCGGT GAAATGCCGA CGGAGGAATT GGGCGTGCGC
GCCATCGACG ATCACACGCT GGAAGTCACG CTGAATGCGC CCCTGCCCTA CTTCCCGCAG
ATGGCCGTGC ACTATACCTT GATGCCGACG CACCAGCCCA CGATTGAAGC CCATGGATCT
GACTGGACCC AACCTGAGAA TATCGTCAGC AATGGCGCTT ACATCCTGAC CGAGATCGCA
ATCAACGAGT ATTTCCGGCT GGAACGTAAC CCCGAATATT GGGGTGCCGA TGACGTGATC
ATTGACAGCG TTACGGGCTA TGTCATCAAC GACGCCAATC AGGCGCTCAG CCGCTTTCAG
GCCGGTGAGT TTGACATGAT GGACGACCTT CCGGCGGGAT CATATCCCGA TCTGGAAGCC
GAGATGCCAG ATACGGTCCA TGCGACGCCG CGCCTGTGCA CCTATTACTA CCTGATCAAC
CAGTCCGAAA GCGGGGCCGA GGCATTGCAG GACGTTCGCG TGCGCACGGC TTTGAGCTAT
GCCATCCGGC GTGAGGTGAT CACCGACCAG ATCCTTCAAG CGGGTCAGCG CCCCGCCTAC
AGCTTCACCC ATTGGGCAAC AGCCGATTTC GAAATGCCCG ACATTGCCTA CGCCAACATG
ACCCAGGACG CACGCATGGA AGAAGCCATG CGCCTGATGA CCGAGGCTGG TTACGGGCCG
GACAACCCAC TGGAACTGGA CCTTATCTAC AACACGTCAG AGAACCACCG GCAGATCGCA
ATCGCCGCCT CACAGATGTG GGCACCGCTG GGGGTTGAGA TCTCGCTGTC GAACTACGAA
TGGCAGAGCT ACCTTGATGT CCGCGGCAAC CAAAACTTCG ATCTCGGCCG CGCGGCATGG
TGTGGCGACT ACAACGAGGC GTCGACATTT CTTGATCTGC TGACATCGAA CAATGACAAT
AACGATGGCA AGTTCGTGAA CGCCGACTAT GACGCCCTGA TGGCAGAAGC GGCGGTGACG
GCCGATCCGA GCGCTCTCTA CGAGCAAGCC GAACAGATCC TTGCTGACCA AATGGCACTG
ATCCCGATCT ACCACTATTC CCAGAACTTC GTGCTGGACC CAACCATCCA CAACTGGCCG
ATGGAGAACG TGGAAAACAA TTGGTACGTG CGCGATCTCT ACCGCGTCGC GTCCGAGTGA
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| Protein sequence | MTRHALLAAT SALVLALPAY AQETHPETGE ALAANQDFSY RLLDQFPSLD PQLIEETAGG
HVGRQLFEGL LTQNADGSLR PGVATEWSSD DNQTWTFTLR DDARWSNGDP VTANDFVYAW
RRAADPVTAS EYSWYVELTQ MTNAAEIIAG EMPTEELGVR AIDDHTLEVT LNAPLPYFPQ
MAVHYTLMPT HQPTIEAHGS DWTQPENIVS NGAYILTEIA INEYFRLERN PEYWGADDVI
IDSVTGYVIN DANQALSRFQ AGEFDMMDDL PAGSYPDLEA EMPDTVHATP RLCTYYYLIN
QSESGAEALQ DVRVRTALSY AIRREVITDQ ILQAGQRPAY SFTHWATADF EMPDIAYANM
TQDARMEEAM RLMTEAGYGP DNPLELDLIY NTSENHRQIA IAASQMWAPL GVEISLSNYE
WQSYLDVRGN QNFDLGRAAW CGDYNEASTF LDLLTSNNDN NDGKFVNADY DALMAEAAVT
ADPSALYEQA EQILADQMAL IPIYHYSQNF VLDPTIHNWP MENVENNWYV RDLYRVASE
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