| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3044 |
|---|
| Symbol | |
|---|
| ID | 3935515 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 3073014 |
|---|
| End bp | 3073343 |
|---|
| Gene Length | 330 bp |
|---|
| Protein Length | 109 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637905415 |
|---|
| Product | nitrite reductase (NAD(P)H) large subunit, NirD |
|---|
| Protein accession | YP_510986 |
|---|
| Protein GI | 89055535 |
|---|
| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG2146] Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases |
|---|
| TIGRFAM ID | [TIGR02378] nitrite reductase [NAD(P)H], small subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.109666 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTGGG TTGATATCGG AGCGTTGGAC GCGGTGCCCG AGCGCGGGGC GCGGTTGGTA
AAGACGCAAA TGGGCTGCGT GGCGGTGTTT CGCACCGGCC ATGAGGAGGT CTTCGCGGCG
TCCAACACCT GCCCCCACAA GGGCGGGCCG CTGGCCGAAG GGATCGTGCA TGGGCAAAGC
GTGACGTGCC CATTGCACAA TTGGGTGTTC GATCTGAACA CCGGTGAGGC AAAGGGCGAA
GACGGCCGGA TCGACACGTA CCCGGTGAGG GTCGAGGCCG GGCGTATCCT GATTGACGCG
CGCACCCTGG CTGCGCGGAG TGCGGCGTGA
|
|---|
| Protein sequence | MSWVDIGALD AVPERGARLV KTQMGCVAVF RTGHEEVFAA SNTCPHKGGP LAEGIVHGQS
VTCPLHNWVF DLNTGEAKGE DGRIDTYPVR VEAGRILIDA RTLAARSAA
|
|---|
| |