Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_3028 |
Symbol | |
ID | 3935499 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | + |
Start bp | 3049778 |
End bp | 3050575 |
Gene Length | 798 bp |
Protein Length | 265 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637905399 |
Product | virulence protein, SciE type |
Protein accession | YP_510970 |
Protein GI | 89055519 |
COG category | [R] General function prediction only |
COG ID | [COG4455] Protein of avirulence locus involved in temperature-dependent protein secretion |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0281455 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACCACTT CCACTGACAC GATCGCCTCC CTTCTGTCCC GCGATGCGCT GGAGGACGCG CGGACCCAGT CCGCCGCCGC CGTCAAGGCC GCCCCACAGG ACACCGACGC GCGCCTGACG CTGGCCCAGA TCTGCGCCAT CGCCGGTGAC CTGCCCCGCG CTGAAACCCA CGCCCGCATG GCCCAGACCC TGGATGAGGC CCGCACCATG GCGCTGGCGG AATTCCGGCA ATACCTGCGC GCATTGGAGG CGCGGGCGCA GTGGTGGGAC GCAGGCGCCG TGCCCGATAT GCCCGGCGGG CCGACCGCGC TGGATCAACT GGCGATGGCA GGTCACGTGG CGCATCTGGC AGGCGACATG GACGGAGCCG TGCGCGCCGC AACCGATCTG GAAGAGGCCC GCCCCGCCTG CACCGGGACA ATAGATGGCA CCGCGTTTGA CGATCTGCGC GATGTCGATG ACCGCCTGCC CCACGCTTTG GAAGTGCTGA CGCCGGGGGG TCACTACCTG TGGCTCGACC TTTCCCGCGT GGCGCGCGTC GACCTCGCGC CCGTCGCCGC GCCGTTTGAT CTGATCGCCC GGCCCGCCCG TGTGGCGTTG CGCGACGGCT CCACCGCCGA TCTGTGCTTG CCCGCCGTCT ATGACGCACC ACGCACTGCG CAGGAACAGC TTGGCCGCGT GACGGAGTTC GAAGAGCTCG CACCCGGCCT TGTGCGCGGT TACGGCCAAC GGGCCTGGCT TGCGGGCGAC GATCTGGTGG GTCTCACCGA TCCGGCGGAG ATCACATTAG ATGAATAG
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Protein sequence | MTTSTDTIAS LLSRDALEDA RTQSAAAVKA APQDTDARLT LAQICAIAGD LPRAETHARM AQTLDEARTM ALAEFRQYLR ALEARAQWWD AGAVPDMPGG PTALDQLAMA GHVAHLAGDM DGAVRAATDL EEARPACTGT IDGTAFDDLR DVDDRLPHAL EVLTPGGHYL WLDLSRVARV DLAPVAAPFD LIARPARVAL RDGSTADLCL PAVYDAPRTA QEQLGRVTEF EELAPGLVRG YGQRAWLAGD DLVGLTDPAE ITLDE
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