| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3028 |
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| Symbol | |
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| ID | 3935499 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 3049778 |
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| End bp | 3050575 |
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| Gene Length | 798 bp |
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| Protein Length | 265 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637905399 |
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| Product | virulence protein, SciE type |
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| Protein accession | YP_510970 |
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| Protein GI | 89055519 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4455] Protein of avirulence locus involved in temperature-dependent protein secretion |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0281455 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCACTT CCACTGACAC GATCGCCTCC CTTCTGTCCC GCGATGCGCT GGAGGACGCG
CGGACCCAGT CCGCCGCCGC CGTCAAGGCC GCCCCACAGG ACACCGACGC GCGCCTGACG
CTGGCCCAGA TCTGCGCCAT CGCCGGTGAC CTGCCCCGCG CTGAAACCCA CGCCCGCATG
GCCCAGACCC TGGATGAGGC CCGCACCATG GCGCTGGCGG AATTCCGGCA ATACCTGCGC
GCATTGGAGG CGCGGGCGCA GTGGTGGGAC GCAGGCGCCG TGCCCGATAT GCCCGGCGGG
CCGACCGCGC TGGATCAACT GGCGATGGCA GGTCACGTGG CGCATCTGGC AGGCGACATG
GACGGAGCCG TGCGCGCCGC AACCGATCTG GAAGAGGCCC GCCCCGCCTG CACCGGGACA
ATAGATGGCA CCGCGTTTGA CGATCTGCGC GATGTCGATG ACCGCCTGCC CCACGCTTTG
GAAGTGCTGA CGCCGGGGGG TCACTACCTG TGGCTCGACC TTTCCCGCGT GGCGCGCGTC
GACCTCGCGC CCGTCGCCGC GCCGTTTGAT CTGATCGCCC GGCCCGCCCG TGTGGCGTTG
CGCGACGGCT CCACCGCCGA TCTGTGCTTG CCCGCCGTCT ATGACGCACC ACGCACTGCG
CAGGAACAGC TTGGCCGCGT GACGGAGTTC GAAGAGCTCG CACCCGGCCT TGTGCGCGGT
TACGGCCAAC GGGCCTGGCT TGCGGGCGAC GATCTGGTGG GTCTCACCGA TCCGGCGGAG
ATCACATTAG ATGAATAG
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| Protein sequence | MTTSTDTIAS LLSRDALEDA RTQSAAAVKA APQDTDARLT LAQICAIAGD LPRAETHARM
AQTLDEARTM ALAEFRQYLR ALEARAQWWD AGAVPDMPGG PTALDQLAMA GHVAHLAGDM
DGAVRAATDL EEARPACTGT IDGTAFDDLR DVDDRLPHAL EVLTPGGHYL WLDLSRVARV
DLAPVAAPFD LIARPARVAL RDGSTADLCL PAVYDAPRTA QEQLGRVTEF EELAPGLVRG
YGQRAWLAGD DLVGLTDPAE ITLDE
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