| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3026 |
|---|
| Symbol | |
|---|
| ID | 3935497 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 3046898 |
|---|
| End bp | 3048382 |
|---|
| Gene Length | 1485 bp |
|---|
| Protein Length | 494 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637905397 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_510968 |
|---|
| Protein GI | 89055517 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3517] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03355] type VI secretion protein, EvpB/VC_A0108 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00788252 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGACTG ACGCGCAAAC CAATCCCGCC ACGCAGACAA CGACCGAGGA TCAGGGCACA
TCGTTGCTGT CCGATGTGAT CGGTGCCACC CGCCAGACCG AGCCGGACCG CACGAAAGAG
CTGATCCGCA CCCTCACCGA TGCCGCCCTC GACGGCACGG TCAGCTACAA CCGCAATCTG
ACGATCACGC TGACCAAGGC GATTGAGGCT CTGGACAGCC GCATTTCCGA GCAGTTGGCG
GCGATCATGC AGGCCCCTGA ATTTGCCGCC CTGGAAGGAT CCTGGCGCGG GCTTTGGCAT
CTGGTGCAGA ACTCCAACAC CTCCGCCAAT CTGAAGATCC GGGTGCTCAA CGCCTCCAAG
AAAGAGATCG GGCGCGACTT GGCCAAGGCC GTTGAATTCG ACCAATCCCG GCTGTTCAAG
GCGATCTATG AGGACGAGTT CGGCACCCCG GGCGGGGAGC CCATGGGCGC GCTGATCGGC
GATTTTGAGT TCGACAACAG CTTTGAAGAC GTCGAATGTC TGCAAGGCAT CAGCCAGGTG
TCGGCCGCAG CCTTCGCGCC TTTCATCTCT GCCGCCTCGC CAAGGCTCTT CGGGTTCGAC
GATTACACCG AATTGTCCAA ACCGCGCGAT CTGTCCAAGA CTTTTGACGC GTCAGAATAT
GCCAAGTGGC GCAGCTTCCG CAATTCCGAG GAAAGCCGCT TCGTCACCCT GACGATGCCC
CGCGTACTGG CGCGCGTGCC CTACGGCCCC AACACCCGCA CCATCGATGA GTTCGATTAC
GATGAGGCCA TCGCCTATGC GGGCGAGCGC ATCCCGCACG ATAATTACTG CTGGATGAAC
GCCTCCTACG CGCTGGCGAC CAATCTTACG GAAGCGTTCA ACCAGACCGG TTGGTGCACC
GCCATTCGCG GCGCGGAAAA CGGCGGCAAA GTCGAAGGGC TGCCGATGCA CCTCTTCTCC
ACCGACGAGG GCGACGTAGA CATCAAGTGC CCCACGGAGA TCGCCATCAC CGACCGGCGC
GATGCGGAGC TTGGGGCCAT GGGGTTTCTG CCGCTTTGCT ATTACAAGAA CCACGACTAC
GCCGTGTTCT TTGGCGCGCA AACGGCCCAC AAACCGGCCA AGTACGACAA GCCGGAAGCC
ACGGCCAATG CGGCGATTTC CGCCCGCCTG CCCTACATGA TGGCCACGTC GCGGTTCGCC
CATTACCTCA AGGTGATCGG CCGCGACAAG ATCGGCTCGT TCATGGAGGC GGAGGATTGC
GAAGACTGGC TGAACCGTTG GATCAGCAAC TACGTCAATG CCAATGACGC GGCGGGGCCG
GACATGCGGG CGCAATATCC GCTACGCGAT GCCAAGGTCT CGGTGGAGGA GATCCCCGGA
AAGCCGGGCA GCTACAACGC CGTGGCCTGG CTGAGGCCCT GGTTGCAGAT GGAAGAGCTG
ACGACGTCCT TGCGGATGGT GGCCCGTATC CCCGAGAAGC AGTGA
|
|---|
| Protein sequence | MATDAQTNPA TQTTTEDQGT SLLSDVIGAT RQTEPDRTKE LIRTLTDAAL DGTVSYNRNL
TITLTKAIEA LDSRISEQLA AIMQAPEFAA LEGSWRGLWH LVQNSNTSAN LKIRVLNASK
KEIGRDLAKA VEFDQSRLFK AIYEDEFGTP GGEPMGALIG DFEFDNSFED VECLQGISQV
SAAAFAPFIS AASPRLFGFD DYTELSKPRD LSKTFDASEY AKWRSFRNSE ESRFVTLTMP
RVLARVPYGP NTRTIDEFDY DEAIAYAGER IPHDNYCWMN ASYALATNLT EAFNQTGWCT
AIRGAENGGK VEGLPMHLFS TDEGDVDIKC PTEIAITDRR DAELGAMGFL PLCYYKNHDY
AVFFGAQTAH KPAKYDKPEA TANAAISARL PYMMATSRFA HYLKVIGRDK IGSFMEAEDC
EDWLNRWISN YVNANDAAGP DMRAQYPLRD AKVSVEEIPG KPGSYNAVAW LRPWLQMEEL
TTSLRMVARI PEKQ
|
|---|
| |