| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3025 |
|---|
| Symbol | |
|---|
| ID | 3935496 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 3046392 |
|---|
| End bp | 3046895 |
|---|
| Gene Length | 504 bp |
|---|
| Protein Length | 167 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637905396 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_510967 |
|---|
| Protein GI | 89055516 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3516] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03358] type VI secretion protein, VC_A0107 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0474697 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAGCA TTCATGACAA ACTGGATAAA GTGCGCAAAC CGCGTGTCCA CATCAAGTAT
GAGGTCGAGA CCGAAGGCGC GATGGTCCAG AAGGAACTTC CCTTCGTGGT GGGCGTCCTT
GGCGACTTCT CCGGCGATCC CACCGAGGAT CTGAAACCCT TCGGTGACCG CAAGTTCGTG
CAGATCGACA AGGATAATTT CAATGAGGTC ATGGCCCGCA TGACGCCGGG CCTGAACTTC
CGCGTCGAGA ACACGCTGTC GGACGAGGAT GATGAAATGA AGGTCCAGCT GGCCTTCAAC
TCCCTCGATG ATTTCGAGCC TGCGCAGGTC GTGGATCAGG TGCCCGCACT GAAGAAGCTT
CTGGAGAGCC GCAATCAGTT GCGCGACCTG CTCAGCAAGG CCGACCGTTC GGAAGAGTTG
GAGACGCTGC TAGAGAAAAT GTTGCAGGAT GATGCCGCGC TGAAAGACAT AGTCGACCAG
CTCAAAGCCG AAGGGGAGAA GTGA
|
|---|
| Protein sequence | MASIHDKLDK VRKPRVHIKY EVETEGAMVQ KELPFVVGVL GDFSGDPTED LKPFGDRKFV
QIDKDNFNEV MARMTPGLNF RVENTLSDED DEMKVQLAFN SLDDFEPAQV VDQVPALKKL
LESRNQLRDL LSKADRSEEL ETLLEKMLQD DAALKDIVDQ LKAEGEK
|
|---|
| |