| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2941 |
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| Symbol | |
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| ID | 3935411 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 2963700 |
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| End bp | 2965016 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637905311 |
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| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
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| Protein accession | YP_510883 |
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| Protein GI | 89055432 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00047152 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.0000126431 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGGGTGGGG ATATCGTCCT TTGGATGCTG GGTCTGTTGA TCCTGTTGAT TTTGCTCGGC
ACCCATATCG GCGTGGCCCT TGCGGTCTGC TCGGGTCTCG GCGTTTTCCT GATGTTGGGC
AGCTTTGAGG CCGCGGTCTC GATCCTGGGC AACACCGCTT ATGAGGCGAT CCGGAAGGAC
GTCTTCGTGG TGATCCCCCT CTTTGTCCTG ATGGGGGATT TCATATCAAG GTCGGGGGCG
GCGGGGGACC TTTACCGGAT TTGTGACCGC ACGCTGAAGC GCCTGCCGGG CCGTCTGGCC
ATCGCGACGA TAGCGGGCAA CACCGTCTTT GCCGCCGTCA CCGGCGTTTC CATTGCCGCC
GCCGCCGCGT TTTCCCGCAT CGCATATCCC GAGATGAAGA AGGCAGGCTA CAAGCAAACC
TTCGCGCTCG GCGCGGTCGC TGGGTCCGCG TGCCTTGGGA TGCTGATCCC GCCCTCGGTC
CTGCTCATTG TTTGGGCGAT CCTGACGGAA CTCAGCGTCG GCGCGCTCTT CATTGCGGGT
ATCATCCCCG GCATCCTTCT GGCCGTCATG TTCGCGGGGT ATGTCGTCAT CTCCGTCATG
CACAAGCCCG AGATCGCGCC TGCCTTCACC GCTGATCTGG TGGAGCCGAC GCGGCAGGAA
ATCCGCTCTG AACTGATCGG AGGGCTCGGT ATTCTCGGCC TCATCATGCT GGTCATCGGC
GGTATCTGGC AGGGCTTCTT CACGCCCACG GAAGCCGCCG GGTTCGGGGC CATCGGCGCG
TTTATCATCG GCCTGATCAA GGGGATGCGT GGCAAGGAAA TCCTCGACGC GATCTATCAG
GCGGGCCGCA CCACCGCGCC GATCATGTTC CTGCTGATCT CGGCCCAGAT GTATTCGCGG
CTCTTGGCCA TCGGCGGGGC GGTGCCGTTC ATTCAGGGCA TCTTCTTCTC CATCGGGGCA
GAGCCGTGGA TGATCATCGC GATGATGATG GTGATCTGGA TCATCCTCGG GATGCTGGTG
GACTCGGTGT CGATCATCCT GCTGACCGTG CCGATCTTCG CGCCCATGGC CGTGATCCTT
GGCATTGACC CCATCGCGTT TGCCATCTTC GGCATTCTGG TGATCGAGGC CGGGCTGCTG
ACGCCCCCGT TCGGCTTGCT GGTCTACACC GTGAAGGGGG CTGTGCCCGA TCCCACCGTC
ACGTTGGGAC AGATCTTCTG GGGCTCCACG CCCTACTTCC TGCTGATCCT TCTGGCGGCG
CTGATCGTGC TGTTCATCCC GTCGCTGGCA ACGTGGTTGC CGGACATCAT GTTCTAG
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| Protein sequence | MGGDIVLWML GLLILLILLG THIGVALAVC SGLGVFLMLG SFEAAVSILG NTAYEAIRKD
VFVVIPLFVL MGDFISRSGA AGDLYRICDR TLKRLPGRLA IATIAGNTVF AAVTGVSIAA
AAAFSRIAYP EMKKAGYKQT FALGAVAGSA CLGMLIPPSV LLIVWAILTE LSVGALFIAG
IIPGILLAVM FAGYVVISVM HKPEIAPAFT ADLVEPTRQE IRSELIGGLG ILGLIMLVIG
GIWQGFFTPT EAAGFGAIGA FIIGLIKGMR GKEILDAIYQ AGRTTAPIMF LLISAQMYSR
LLAIGGAVPF IQGIFFSIGA EPWMIIAMMM VIWIILGMLV DSVSIILLTV PIFAPMAVIL
GIDPIAFAIF GILVIEAGLL TPPFGLLVYT VKGAVPDPTV TLGQIFWGST PYFLLILLAA
LIVLFIPSLA TWLPDIMF
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