| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2879 |
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| Symbol | |
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| ID | 3935346 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 2898866 |
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| End bp | 2901085 |
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| Gene Length | 2220 bp |
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| Protein Length | 739 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637905247 |
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| Product | TRAP transporter, 4TM/12TM fusion protein |
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| Protein accession | YP_510821 |
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| Protein GI | 89055370 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.512732 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGATC AGACCGCACA GCAGGACGAC ACGCGCACGT TGACCGAAGA GGAACTTGCC
GAGATCGAGC GCAAGTATGA CGAGGGCGCC GCCACTCGGC CCGTCGGCCC GCGGCTGGGG
TTGGCCCTGC GCGCCGTGGC GCTGACATTC GCCGTCTACC ATTACCTGAC CGCAGGCTTC
GCCCTGCCCG CCGACCACTG GCACATGGGC TGGCATCTGG CGGGCCTGTT CATCCTGACC
TACGCCTTCT TCCCCCTCTT CAAGACCAAA CGCGCGTTCG AGATGCGCCC CAGCGCGTTC
CGCGTCGGCA ATGTGCCGAT CTTCGATTTC GTCCTGATGA TCCTTGGCGT CGGCGCGGCC
CTTTATCTGG GGCTCGCGTG GCGCGGCATC CCCGGGCTCG GCATCGACGA GCAGACGTTT
CGCATGGGCA ACCCGAACAA TTACGACATC TTCTTCGGCC TCGTGCTGAT CATCCTGGTC
CTCGACATCG CGCGCCGGAC ATTGGGCTGG ATCCTGCCCG CGATCATCTG CGTCTTCATC
GCCTATGCGC TGTTCGGCCC GTGGTTTCCG GGCGTGTTGC AACATCCCGG CGTGCGGTTC
CGCACCTTCG TGTCGTCGAT GTATTTCCCG CAGGAAGGCA TCTTTGGCGT CACGCTCTGG
GTCGTGTCCA CCATCGTCTT CCACTTCGTG CTGTTCGGCG TGATCGCGCA GCGCACGGGC
CTGGGGCAGT TGTTCATCGA CAACGCGACG ATCCTTGCGG GGCGCTATAC GGGCGGACCT
GCGAAAGTGT CCGTCGTGTC CTCGGCCTTT TTTGGCACGA TCTCGGGCAG TTCAGTGGCC
AACACCGTCT CCACCGGCGC GCTGACCATC CCCAACATGA AACGGCTGGG GTATCCGGGC
CATTTCGCGG GCGGGGTGGA GGCAGCCTCC TCCGCCGGTG GCCAGATCAC GCCGCCGATC
ATGGGCGCGG CCGCCTTCAT CATGGCCGAA TTCCTGGAGG TCCCCTACAC CACCATCGTC
ATCGCCGCGA TCTTCCCGGC GCTGCTGCAC TATGTGGGCG TCTTCACCGT TGTGCACCTG
ATGGCCAAAA AGCTGGACCT TAAGGGCCTG ACCAAAGACG CGATGCCGCA ATTCAAGGCG
GTCTGGAAGG AGGGATGGGC CAATATCGTG CCGCTGGTGG CGCTGCTGGT CGTCCTCTTC
TCCGGCTACA CGCCTTATAT GTCGGCCTTC TGCGGGATAT CCGTGGCGAT CATCGCGGGC
ATGAGCCGTG TGCGGGAGCC GCTGTCGCTG ATCTATGCCA TAGCCTTCAT CGCCTTCGTG
ATCTGGAAAT ACATGGGTGG CGGGTTTGAC ATCGGCATGT CGGGCATCCT GATCGCCTGC
GCCGTCTTGG GGTCGTTCAA CCCGCAGGCC CGGGTGAAGC TGCCGGAAAT GGCCACCACG
TTCGAGACGG GCGTGAAATA CGCGCTGGCC GTGGGGGCGG CCTCGGCGGC GGTGGGCATC
GTGGTGGGGG TGATCAACAC CACGGGCATC GGCTTCCGCA TCGGCTTCAT GGTGACGCAG
GGCGCGTCCA ATCTGGGCTC CGACCTGCAT GTGCTGTTTG CCATGACAGG GCTGCAATTC
ATCACCGTGG AAGATCTGAC GCTGTTCATC AGCCTCGTCT TCATCGCCGT GGCCTGCATC
CTGATGGGCG CGGGCGTGCC GACGACGGCG CTCTATATCA TGCTGGTCTC CGTCGCGCAG
CCGGCGCTGT CGCAACTGGG CATTCCGCCC ATCGCGTCGC ATATGTTCGT ACTCTATTAC
GGGGTCGTGG CGGAGATCAC GCCACCGGTC TGCACATCGG CCTATGCGGC AGCAGCCATC
GCCAATTCCA ACCCGTTCAG AACCGGCATA TCCGCCTTCA CCCTGGGCCT TGGCAAGGTG
GTGGCGCCGA TGGCCTTCGT CTATGCGCCG GTCCTGTTGT TCGTATCCTC AACCGGGTTC
GACTTCTGGG AATTCACCTA CACCGCCGCC AGTTGCATCG CGGGGGTCGT GGCGCTGTCC
ACGGCGGTGG TCGGCTACTT CTACGCGCCG GTGAATATCG CCTTCCGGTG GTTGCTGGCG
TTTGCCGGGC TGGTCTTCAT CGCGCCATCC ATTCAGGCCG ATATCTTCGC GCTGGTCCTG
TGCACGCCGG TGATCATCAG CCAGTTGGTG AAGCGCCGCA CGGTGGCCCC AGCCGGATGA
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| Protein sequence | MADQTAQQDD TRTLTEEELA EIERKYDEGA ATRPVGPRLG LALRAVALTF AVYHYLTAGF
ALPADHWHMG WHLAGLFILT YAFFPLFKTK RAFEMRPSAF RVGNVPIFDF VLMILGVGAA
LYLGLAWRGI PGLGIDEQTF RMGNPNNYDI FFGLVLIILV LDIARRTLGW ILPAIICVFI
AYALFGPWFP GVLQHPGVRF RTFVSSMYFP QEGIFGVTLW VVSTIVFHFV LFGVIAQRTG
LGQLFIDNAT ILAGRYTGGP AKVSVVSSAF FGTISGSSVA NTVSTGALTI PNMKRLGYPG
HFAGGVEAAS SAGGQITPPI MGAAAFIMAE FLEVPYTTIV IAAIFPALLH YVGVFTVVHL
MAKKLDLKGL TKDAMPQFKA VWKEGWANIV PLVALLVVLF SGYTPYMSAF CGISVAIIAG
MSRVREPLSL IYAIAFIAFV IWKYMGGGFD IGMSGILIAC AVLGSFNPQA RVKLPEMATT
FETGVKYALA VGAASAAVGI VVGVINTTGI GFRIGFMVTQ GASNLGSDLH VLFAMTGLQF
ITVEDLTLFI SLVFIAVACI LMGAGVPTTA LYIMLVSVAQ PALSQLGIPP IASHMFVLYY
GVVAEITPPV CTSAYAAAAI ANSNPFRTGI SAFTLGLGKV VAPMAFVYAP VLLFVSSTGF
DFWEFTYTAA SCIAGVVALS TAVVGYFYAP VNIAFRWLLA FAGLVFIAPS IQADIFALVL
CTPVIISQLV KRRTVAPAG
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