| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2878 |
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| Symbol | |
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| ID | 3935345 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 2897775 |
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| End bp | 2898782 |
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| Gene Length | 1008 bp |
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| Protein Length | 335 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637905246 |
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| Product | TRAP transporter solute receptor TAXI family protein |
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| Protein accession | YP_510820 |
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| Protein GI | 89055369 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2358] TRAP-type uncharacterized transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02122] TRAP transporter solute receptor, TAXI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.082119 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTTTG CACCCAAGCT GGCCAGCGTC GCGCTTATCG CGGCCATGGC GGCTGCTGCA
CCTGCCGCAG CACAAGAATT TTTCCGCATC GGGACAGGTG GGGCCGGCGG CACCTACTTC
CCCATTGGCG GCGCGATTGC GACCGCGATA TCTGCGCCTC CGGGCTCACG TCCCTGCGAC
GAGGGCGGGC AATGCGGCGT CGAGGGGCTG ATCGCCATCG CCCAATCCAC GACTGCGTCG
GTGTTCAACA ACGCCGCCGT CCAGAACGGA GAGCTGGAGG CTGGCCTTGC GGCGGCGGAT
GTGACCCGGT CCATGTATCT GGCCGAGGGC AATTTCGAGG GGCGCGAGCA TCCGAACCTG
CGCATCATCG CCAACCTGTT CCCGGAAGAC CTGCATCTGG TGCTGCCCGC GGGAGAGACG
ATCAACGACC TGAGCGATCT GGAAGGTCTG CGGGTGGGCA TCGCCCAGGC AGGCTCCGGC
ACACAGGTGG CCGTGCTGCA AATGCTGGAA TTGTGGGGCA TCACCCGCGA CAACATCGAA
GAGGCGGAGT TGAACAACAG CCAATCCGCC GCGCGCCTGG CCGATGGTCA GCTGGACGCT
TACTTTTATG CGGCGGGCTG GCCGGTCGCA GCGATGGTGC AGCTGGCGTC GACATCGGGC
ATGAACCTGC ATTCCTTCAC CGAGGAAGAC ATGGCCCGCA TCAACGATGC GATCCCGTCC
TATATCCCCT CGATGATCCC CGGCGGCACC TATGAGGGCA TCGACAATGA CACGCTGACC
CCTGCCGTGT CCGCGCTTCT GGTGACCTCG TCCGAGGTGG ATGAAGAGCT GATGTATAAC
ATCACTGCCG CCCTGTGGAA CGACGCCACG CGCCGCATTC TGGATAACGG CCACCCCAAA
GGCCGCCAGA TCACGCCGGA CACGGCGCTG GCAGGCATCG AGGCGTTGGG CGTGCCGCTG
CACCCCGGCG CACAGCGTTT CTATGAGGAA GCGGGCCTGA TGGAGTGA
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| Protein sequence | MSFAPKLASV ALIAAMAAAA PAAAQEFFRI GTGGAGGTYF PIGGAIATAI SAPPGSRPCD
EGGQCGVEGL IAIAQSTTAS VFNNAAVQNG ELEAGLAAAD VTRSMYLAEG NFEGREHPNL
RIIANLFPED LHLVLPAGET INDLSDLEGL RVGIAQAGSG TQVAVLQMLE LWGITRDNIE
EAELNNSQSA ARLADGQLDA YFYAAGWPVA AMVQLASTSG MNLHSFTEED MARINDAIPS
YIPSMIPGGT YEGIDNDTLT PAVSALLVTS SEVDEELMYN ITAALWNDAT RRILDNGHPK
GRQITPDTAL AGIEALGVPL HPGAQRFYEE AGLME
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