| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2654 |
|---|
| Symbol | |
|---|
| ID | 3935118 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 2666365 |
|---|
| End bp | 2667567 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637905019 |
|---|
| Product | aspartate aminotransferase |
|---|
| Protein accession | YP_510596 |
|---|
| Protein GI | 89055145 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.24242 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.00639864 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCCCTTCC TTTCCGACAC GCTTGCCCGG GTCAAACCTT CGCCCACGAT TGCCGTCACC
AACCTCGCCA ATGAGCTGAA GGCTCAGGGC AAGGACGTGA TCGGGCTGGG GGCCGGTGAG
CCGGACTTCG ACACGCCGCA AAACATCAAG GATGCCGCAC AGGCGGCGAT CAATGCGGGC
AAGACGAAGT ATACGGCCGT GGACGGTATT GTGGAGTTGA AAGAGGCCAT CGTCGCAAAG
CTCAAGCGCG ATAATGACCT GTCGTATCAG ACGTCTCAGG TGACCGTCGG CACCGGCGGC
AAGCAGATCC TTTACAACGC GCTGATGGCG ACGCTGAACG CGGGTGATGA AGTGATCATC
CCCGCGCCCT ATTGGGTGTC CTACCCCGAT ATGGTGCTGC TGGCCGGGGG GGAGCCGGTG
TTCGTGGAAG GCCCAAGCCA GACCGGCTAC AAGATCACGG CCGAGCAGTT GGAAGAGGCG
ATCACACCGA ACACCAAATG GTTCATCTTC AATTCGCCCT CCAACCCCAC CGGCGCGGGC
TACACGGCCC ATGAGTTGAA GCAGTTGACC GATGTTTTGC TGCGTCATCC GCATGTTTGG
GTGATGACTG ACGACATGTA CGAACACCTC GTCTACGATG ATTTCCAGTT CGCCACCCCC
GCCCAGGTGG AACCGCAATT GATGGGCCGC ACGCTGACCT GTAACGGCGT GTCCAAGGCC
TATGCGATGA CCGGCTGGCG TATCGGATAT GCGGCAGGCC CCGATGAGTT GATCAAGGCG
ATGCGCAAGG TGCAGTCGCA ATCCACGTCC AACCCCTGTT CGATCTCGCA ATGGGCCGCT
GTGGAGGCCC TGAACGGCAC GCAAGACTTC CTCGCGCCCA ATAACGAGAC CTTCAAGCGC
CGCCGCAACC TGGTGGTGGA AATGCTGAAC GCGGCAGACG GCATTGATTG CCCGACGCCT
GAAGGGGCCT TTTACGTCTA CCCCTCCATC CACGGCTGCA TCGGCAAAAC CTCCGCCGGG
GGCACCAAGA TCGACACCGA TGAGACGTTC GCCAAGGCGT TGTTGGAAGA GACCGGCGTA
GCCGTCGTCT TCGGCGGCGC ATTCGGCCTG TCGCCAGCGT TCCGCGTGTC CTACGCGACC
TCGGACGAGA ACCTGAAAGA GGCCTGCACG CGCATCCAGA CGTTCTGCGC GTCCCTGACC
TGA
|
|---|
| Protein sequence | MPFLSDTLAR VKPSPTIAVT NLANELKAQG KDVIGLGAGE PDFDTPQNIK DAAQAAINAG
KTKYTAVDGI VELKEAIVAK LKRDNDLSYQ TSQVTVGTGG KQILYNALMA TLNAGDEVII
PAPYWVSYPD MVLLAGGEPV FVEGPSQTGY KITAEQLEEA ITPNTKWFIF NSPSNPTGAG
YTAHELKQLT DVLLRHPHVW VMTDDMYEHL VYDDFQFATP AQVEPQLMGR TLTCNGVSKA
YAMTGWRIGY AAGPDELIKA MRKVQSQSTS NPCSISQWAA VEALNGTQDF LAPNNETFKR
RRNLVVEMLN AADGIDCPTP EGAFYVYPSI HGCIGKTSAG GTKIDTDETF AKALLEETGV
AVVFGGAFGL SPAFRVSYAT SDENLKEACT RIQTFCASLT
|
|---|
| |