| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2615 |
|---|
| Symbol | |
|---|
| ID | 3935078 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 2634301 |
|---|
| End bp | 2635074 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637904979 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_510557 |
|---|
| Protein GI | 89055106 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.711608 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.149897 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATCAG GTCACAAAAC GGCAATCGTA ACAGGTGGCT TGTCCGGGAT GGGGCTCGCG
ATTGCGCGGC GGCTGGCGCG TGACGGGACA ACCGTTGTGA TCGGTGCGCG CAGTGCGGGC
GACACGGATT ACGTGAAAGA TGTTCTGGGA ACCGATGCGG ATGGTCTTCA CGCCGAACAA
CTGGATGTCC AATCGCACGA AAGTGTCGAT GGGTTTGTTG CAAGCGTGGT CAAGACCCAC
GGCGGTGTCG ACATTCTGGT CAACGCAGCC GGCGTTTACG AGGAGGCCGC CGTGATTGAT
CACCCCGAGC AGATCTGGGA CGACCACATC AACACGAACC TCAGCGGCAC ATTCCGCACG
ATCCGTGCCG TGATGCCCCA TATGAAGCGT GCGGGCTGGG GGCGGATCAT AAACATGGCG
TCGGTCGCCG CGCATAATGG GATGGCCAAC AACGCGGCCT ATTGCGCCTC CAAAGCCGGG
CTTTTGGGGT TGGGACGTTG TGTGGCGTTG GAAGGGGCGG CCCATGGCGT GACCTGTGTG
TCGATCAGTC CGACCTGGGT TGAAACGGAA ATGCTGCGTC GGTTTATTGA CGCGGATATG
AAGGCCACGG GTCAGACGCT GGAGGACGTG AGGGCCGAAT ACGCAAAGTC GAACCCGCAA
AACCAGCTTG TTCAGCCCAC CGAAGTGGCC GAGCTTGCCG CCTTTCTGGC CAGCGACGCC
GCCCGCGCGC TGACCATGGA AGATTATCAG GTCAACGCGG GATCGCTTTG GTAG
|
|---|
| Protein sequence | MTSGHKTAIV TGGLSGMGLA IARRLARDGT TVVIGARSAG DTDYVKDVLG TDADGLHAEQ
LDVQSHESVD GFVASVVKTH GGVDILVNAA GVYEEAAVID HPEQIWDDHI NTNLSGTFRT
IRAVMPHMKR AGWGRIINMA SVAAHNGMAN NAAYCASKAG LLGLGRCVAL EGAAHGVTCV
SISPTWVETE MLRRFIDADM KATGQTLEDV RAEYAKSNPQ NQLVQPTEVA ELAAFLASDA
ARALTMEDYQ VNAGSLW
|
|---|
| |