| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2600 |
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| Symbol | |
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| ID | 3935063 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 2613193 |
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| End bp | 2616129 |
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| Gene Length | 2937 bp |
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| Protein Length | 978 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637904964 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_510542 |
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| Protein GI | 89055091 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.861539 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.836089 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGCCG AGGTGACCAT GAGCATTGAG ATCTTAAAGA CCAACTTCAT GGAGTTGACC
AGCGATGCCG TCGTGGTCGG CTACGTCGCA CCGGGTGAGC GCGTTGCGGT GCTTAAGTAT
GTGAACGCGG CCTTTACCGC CCAATTCGGT TACGCGCCCG ACGACATTCT TGGAAAGACC
GCCGCAACCC TCCACGACGA AGAGGATTGG GCCGGCTTCA AATCAACCGT CGACGGCCAC
ATCGCTGCAC ATAGAACGCA GTTCTCCACC GATGCAAAGA TGGTCCGCGC CGATGGGAGC
CGGTTCTGGG CGAGCGCGTC ATTGATCGTG GTCGAGAACG AAGACGAGGG CGGGCGCTAT
GTCTGCGCAA CCTTTCGCGA CATCTCAAAC CTCAAGGAAG CGGAGACCAC GGCGCAAAAC
GCCCATGGTC GGCTGATCTC GGCCCTCAAT GCCTATCCCG ACCCTATCGT TATCTATGAC
AAGGATCTGT TGCTGGTGTG CTGGAACGAT GCTTATGCGA TCCAGATGAC AGGCCGCGCC
GAAGGTTTGC AGGTTGGAAT GCATCTGAAG GACGTGCTGC GACGCTGTGC GTTTCATGGC
CAGGTTGCCG AGGCCAAGGG CCGTGAGGAG GCGTGGATTG CACAAACCAT GTCGCCCGAG
AACCTGGCGG TGGTCGCGCA GGACATCGAG ATGGAGGGCG ATATCCATCA GCGGCTCATG
CGCTCGCGGG CATCCAACGG CGACTACGTG GTCTTCCGCC TCGATACGAC GGAGATGGTG
CGTCAACGCC GCGCCTCGGA AGCGGCCCGT TCACGGCTTC TGGCCGCGCT CAATACCTAC
CCTGCCCCCT TCGCGATCTA CGACGCCGAC GACAGGCTTG TGGTGTGGAA CAACGCCTAT
GCCGCCTCCA TGGCCAAGGA TATCGCGAAT ATCCAAGTCG GCCTTCATCG CAGGGATGTG
GCCGCAATCG CCGTGCGCGA TGGGATATTG GCCGAAGCCG TGGGCAATGA GACCGAGTGG
ATCTCCAAGG AACACCAGGA GGCCGATCTT GCGAAACCCG TGCAGGATCT GGAGCTGGCC
GGCGATATTC ACCACCGATT GCTAAGGTCG CGGGCCGAGA ATGGCGATCT GGTGATGTTG
CGGATCGATA CCACCGAAAT CGTCCGTCAC CGCCGCGCGC TGGAGAAAAC GCAGGACCGG
CTGATCTCGG CCATCAACGC CTATCCGGAC CCTTTCGCGA TTTATGACCG TGACCAGAAC
CTTGTGATCT GGAACCCCGC ATATGCGCAG TCGATGACAG ATGATCCCGA CAGCCTCTAC
CCCGGGATCA GTCTGAAGGA GTTGCTGTTG GGTGCCGCCC GATGCGGGCG CATTCCGGTG
AGCGGCATGA GTATAGAGGA TTGGGTGGAG GAATATTACT CCGAAGATCT TCTCAAACCC
GGCGCGGAAG ACTTCGAGTT TGTCGGCGAC ACCCATTTTC GCATGGTTCG GTCCCGCGCG
GAAAACGAAG AACATGTGGT GTTGAGCCTG AATATCACGG AGGTGGTCCG CCAGCGCCGC
GCGGTGGAGG AATATGCCAA GAAGTTGGAG AAGGCCAACG CCGCCATCAC GCGCCAGGCC
CAACGCGATG AACTGACGGG CCTGGGCAAC CGCCGCTACC TGGGCCTGAA GTTTGACGCA
TTCGTCGCCC GACGCGCCCG GAATGGCGGG GAGATCGCGG CCCTGCATAT CGACCTGGAC
CGGTTCAAGC AGATCAATGA CACGATGGGC CATGCTGCGG GTGACAAGGT GCTGCTTGAA
ACCTCCAAGC GGGTGCAACG CCTGATCGGC CCGGACGATG TGGTGGCGCG CATCGGAGGG
GACGAATTCG TCGTGCTGAT CTATGAGCCG ACCGTCAGTC AAAGGCCCGA AACGCTGACG
GGTGTCTTAC TGGACGCCTT GTCGCGGCCG ACCCAGTTCG AGGGCCGCGA ATGCCGGTTC
GGGGCCTCCA TTGGCCTGGC GCGCACGCCT CTTTCGGGGG TCGATGAGCT TTTGACCAAT
TCGGACGTCG CCCTTTACAA GGCCAAGCGG CGCGGACGCA GTCAGGTCAG CAGTTTCGAC
CGCTCGGATT TGGAGGAGTT GCGCTGCAAC AAGACGCTGG CCGATGACAT CCTGCGCGGC
ATCGAGGGTG GAGAGTTTGT GCCATTTTAT CAGCCCCAAG TGGACGCCAA AACGGGACGG
GTCTTGGGGT TGGAGGCACT GGCCCGCTGG GATCACCCCC AAAAAGGCGT TCTGGCACCG
TCGCATTTCT TGCAGATCGC GACCGACCTC AACGTCGCGG CGGACATCGA CCGGATGATT
TTCGAAGCCG CGATTGATGA ATGCAGCAAC ACCTTCCAGG CCTTGGGTCA GCCCCCGACC
CTGTCGTTCA ATGTCAGCGC GCGCCGGGTC AGCGATGACA ACATACAAGA CATTGCAGGC
CGCGTGCGCC AATACCCCGG CCAGGTGTGT TTTGAGCTGT TGGAGACGAT CTTCCTTGAA
GAAGAAGGAG ACGAATTCCT GAACCAGCTC GACCGTCTGC GGGAGCTAGG GATTGGGCTT
GAGGTCGATG ATTTCGGCAG CGGGCGCGCC TCGGTCATCG CCTTGCAGCG CATCGCACCG
GACAGGCTCA AGATCGATCG TCGGCTGGTT GCCCCCATTG CCCATTGCGC AAAAGGCGTC
CGCCTGCTCC GCTCGATCGT GGAAATCGGG CTGTCGCTGG AGATGGGGGT GACTGCCGAA
GGTGTGGAAA CGCGCGAACA GGCAGATATC CTGGCGGAGT TTGGCTGTGA CCGGCTGCAG
GGCTATCTTT TTGCAAAGCC CATGGGCTTC GCGGATATGG CAGCGTTCAT GGAGCGCAGT
CAGGGACTGG ATGACGCCGC CACCGTCGCG CGGTTGCACA AGGCGCGGCG GGCCTGA
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| Protein sequence | MAAEVTMSIE ILKTNFMELT SDAVVVGYVA PGERVAVLKY VNAAFTAQFG YAPDDILGKT
AATLHDEEDW AGFKSTVDGH IAAHRTQFST DAKMVRADGS RFWASASLIV VENEDEGGRY
VCATFRDISN LKEAETTAQN AHGRLISALN AYPDPIVIYD KDLLLVCWND AYAIQMTGRA
EGLQVGMHLK DVLRRCAFHG QVAEAKGREE AWIAQTMSPE NLAVVAQDIE MEGDIHQRLM
RSRASNGDYV VFRLDTTEMV RQRRASEAAR SRLLAALNTY PAPFAIYDAD DRLVVWNNAY
AASMAKDIAN IQVGLHRRDV AAIAVRDGIL AEAVGNETEW ISKEHQEADL AKPVQDLELA
GDIHHRLLRS RAENGDLVML RIDTTEIVRH RRALEKTQDR LISAINAYPD PFAIYDRDQN
LVIWNPAYAQ SMTDDPDSLY PGISLKELLL GAARCGRIPV SGMSIEDWVE EYYSEDLLKP
GAEDFEFVGD THFRMVRSRA ENEEHVVLSL NITEVVRQRR AVEEYAKKLE KANAAITRQA
QRDELTGLGN RRYLGLKFDA FVARRARNGG EIAALHIDLD RFKQINDTMG HAAGDKVLLE
TSKRVQRLIG PDDVVARIGG DEFVVLIYEP TVSQRPETLT GVLLDALSRP TQFEGRECRF
GASIGLARTP LSGVDELLTN SDVALYKAKR RGRSQVSSFD RSDLEELRCN KTLADDILRG
IEGGEFVPFY QPQVDAKTGR VLGLEALARW DHPQKGVLAP SHFLQIATDL NVAADIDRMI
FEAAIDECSN TFQALGQPPT LSFNVSARRV SDDNIQDIAG RVRQYPGQVC FELLETIFLE
EEGDEFLNQL DRLRELGIGL EVDDFGSGRA SVIALQRIAP DRLKIDRRLV APIAHCAKGV
RLLRSIVEIG LSLEMGVTAE GVETREQADI LAEFGCDRLQ GYLFAKPMGF ADMAAFMERS
QGLDDAATVA RLHKARRA
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