| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2569 |
|---|
| Symbol | |
|---|
| ID | 3935032 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 2576622 |
|---|
| End bp | 2577647 |
|---|
| Gene Length | 1026 bp |
|---|
| Protein Length | 341 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637904933 |
|---|
| Product | TRAP dicarboxylate transporter- DctP subunit |
|---|
| Protein accession | YP_510511 |
|---|
| Protein GI | 89055060 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.504865 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATATC TCACGAGCAT CCTCGCGGCC TCCACCGCGC TTGCCGGTGC CGCCCACGCC
CAGGATCTGT CCGTTGTCGG CAGCTGGTCC GGCCTGCCGC TCCACGGCCA GTACGAAGCG
CCGTTCTGGA CTGAAACACT GCCCGCCGCC GGGGATTTCA ATGTGGAACT GACCACCCAC
AACCAGATGG GCCTGGGCCT GTCGGAGATC TATCCGCTTC TGGGTCAGGG GGTCTATGAC
GTCGCGATGA CCGTCGGTGA CTATGCCGTA GGGGACGCGC CGGAGCTGGA AGGGTTGGAC
GTGCCGCTGC TGGCGCTGAC CGCCGATGAG GCGCGCGCGA TGGTCGATGC GGCCCGCCCG
ATGGTCAGCG ATATCTTCCG GGATCGGTTC AACGCGGAAG TGCTGGCGAT TGCGCCGTAC
CCGCCGCAGG TCGTGTTCTG TAACGCGGAA ATCGGCGGCT TGGAGGACCT GGAAGGCCTT
CAGATCCGCG CCTCTGGCCG GATGACCGCG CTGCTGCTGG AGGCCCTCGG GGCGGAAGGC
GTGAACGTGT CCTTCTCGGA AGTGCCGGGT GCGTTGCAGA ACGGCGTCGT GGATTGTGCG
GTCACCGGGG CGGGGTCCGG CTATTCCGCG GGGTGGTGGG AGGTCTCCAC GCACCTTCTG
CCGATCCCGC TCGGGGGGTG GGACAGCGTC GTGACGGCGA TGAACCTTGA TACCTGGAAC
GGGCTCAGCG CCGAGGCGCA GGCGACGCTC CAGGACCAGA TTGTCAGCGG CTTTGAGGAC
CCGGCCTGGG CGTCGGCGCA GGACGCGCTG GTCAATGATA TCGCCTGCCT GACGGGCAAT
GGCGACTGCC CGGCGGGTGA TGCGCGGGAC ATGACGCTGG TGGAGGTCTC GGACGAAGAT
TTCGCCCGGG CGCGGGACGT TCTGACCTCC ACCGTGCTGC CCGATTGGGC CGAGCGGGCG
GGCGGTGATT GGGCCGAGCG GTGGAACGCC TCGGTGGGCC AGGTCGTGGG CGTCACCATC
GAGTAA
|
|---|
| Protein sequence | MKYLTSILAA STALAGAAHA QDLSVVGSWS GLPLHGQYEA PFWTETLPAA GDFNVELTTH
NQMGLGLSEI YPLLGQGVYD VAMTVGDYAV GDAPELEGLD VPLLALTADE ARAMVDAARP
MVSDIFRDRF NAEVLAIAPY PPQVVFCNAE IGGLEDLEGL QIRASGRMTA LLLEALGAEG
VNVSFSEVPG ALQNGVVDCA VTGAGSGYSA GWWEVSTHLL PIPLGGWDSV VTAMNLDTWN
GLSAEAQATL QDQIVSGFED PAWASAQDAL VNDIACLTGN GDCPAGDARD MTLVEVSDED
FARARDVLTS TVLPDWAERA GGDWAERWNA SVGQVVGVTI E
|
|---|
| |