| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2558 |
|---|
| Symbol | |
|---|
| ID | 3935021 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 2557863 |
|---|
| End bp | 2560784 |
|---|
| Gene Length | 2922 bp |
|---|
| Protein Length | 973 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637904922 |
|---|
| Product | formate dehydrogenase, alpha subunit |
|---|
| Protein accession | YP_510500 |
|---|
| Protein GI | 89055049 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3383] Uncharacterized anaerobic dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01591] formate dehydrogenase, alpha subunit, archaeal-type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.779669 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGATT TCATTATTCC CTGGGATGAT CGGGACATGG GGACGAAGGC CGTTGACGGC
GCGCCGGTGA CCCTGACTGT GGACGGATTT GAGGTGACGG TGCCCGAGGG CACGAGTGTC
ATGCGGGCGG CGTCGGAGAT TGGGATGCAG ATCCCGAAGC TTTGCGCGTC GGACAATCTG
GAGGCGTTTG GATCCTGCCG GTTATGTGTG GTGGAGATCG AGGGGCGGCG CGGCACGCCC
GCGTCCTGCA CCACGCCCGT GGCCGAGGGT ATGGTCGTGC GCACCCAGTC CAGCAAGGTG
AAGAAGATCC GTCGCGGCGT GATGGAGCTG TATATCTCCG ACCACCCGCT CGATTGCCTG
ACCTGTGCGG CCAATGGCGA TTGCGAATTG CAGGACATGG CGGGGGCCGT GGGCCTGCGC
GATGTGCGGT ATGAGGCGCC GGAGAACGCG TCGCTGGCGA ACCATTTCGA GGCCCGCAAA
GGCGACCAAC CGAACCCGGA ATGGATCCCC AAGGACGACA GCAATCCGTA CTTCACCTAC
GATCCCGCCA AATGCATCGC GTGTTCACGC TGCGTCCGGG CTTGCGAAGA GGTGCAGGGG
ACCTTTGCCC TGACCATGGA AGGACGCGGG TTCGATAGCC GCATTTCCGC CGGGGGGCCG
GACAGTGATT TCCTGACCTC CGATTGTGTA TCCTGCGGGG CCTGTGTGCA GGCCTGCCCG
ACGGCGACGT TGCAGGAGAA ATCCGTCATT GAATTGGGCA CGCCCGAGCG CTCCGTCGTG
ACGACCTGCG CCTATTGCGG CGTGGGGTGT TCGTTCAAGG CGGAATTGAA CGGCGACGAA
TTGGTGCGGA TGACGCCCTA CAAGCACGGG GAGGCGAACC GCGGCCATTC CTGCGTGAAG
GGGCGGTTCG CTTACGGTTA TGCCAACCAT TCCGACCGCA TCCTCAACCC GATGATCCGC
GACAGCATTG ATCAGCCTTG GAAAGAGGTG TCCTGGGAGG AGGCGATTGG CTTTGCCGCC
GACCGGATGC GCGGTTTGCA GGAAAAGCAC GGGCGCAAGA GCATCGGCGT GATCACCTCG
TCGCGCTGCA CGAATGAAGA GACCTATCTT GTGCAGAAGC TGGCGCGCGG CGTCTTCATG
AACAACAACA CCGACACCTG CGCGCGGGTC TGCCATTCGC CCACCGGCTA CGGTTTGGGT
CAGACGTTCG GCACCAGTGC GGGCACGCAG AACTTCGATA GCGTTGAACA GGTGGACGTC
GCCATCATCA TCGGCGCGAA CCCGACGGAC GCGCATCCGG TCTTTGGCAG CCGCCTGAAA
AAGCGCGTGC GGGCAGGGGC TAAGCTGATC GTGATCGACC CGCGCAAGAC CGATGTGGTG
CGCTCAGCCC ATATCGAGGC GGCGCATCAT TTGCCGCTGC GCCCGGGCAC CAATGTGGCC
GTGGTCACCG CGATGGCCCA TGTGATCGTG GATGAGAAGA TCTATGATGA GCAATTCATC
CGCGAGCGGT GTGACTGGAA TGAGTTCGAG GAATACGCGG AATTCGTCCG GGATGTCCGC
CATTCCCCCG AAATGACGGA GATGCTGACC GGCGTCCCGG CGGAGGAGCT GCGCCGCGCC
GCCCGCCTCT ATGCCACCGG TGGCAATGGT GCCATTTATT ACGGCCTCGG CGTGACCGAG
CATTCCCAGG GCTCCACCAC GGTCATGGGC ATCGCCAACC TCGCGATGAT GACCGGCAAT
ATCGGGCGCG AAGGCGTTGG CGTGAACCCG CTGCGGGGCC AGAACAACGT GCAGGGCTCT
TGCGATATGG GCTCTTTCCC GCACGAATTG CCCGGGTATC GCCATGTGAA AGGCGATGAG
GTCCGCGCGC TGTTCGAGAG CAAATGGGGG GTGGAGATTG ACCCGGAGCC CGGCCTGCGC
ATCCCCAATA TGCTCGACAG CGCCGTCGGC GGCACCTTCA AGGGCCTGTA TTGTCAGGGC
GAGGACATCC TGCAATCGGA CCCCGACACA CACCACGTCG CGGCGGGCCT CGCAGCCATG
GAATGCGTCA TCGTCCACGA TCTGTTCCTC AACGAGACGG CGAATTACGC CCACGTTTTC
CTGCCCGGAT CGACGTTCCT GGAGAAGGAC GGCACCTTCA CCAATGCCGA GCGGCGCATC
AACCGCGTGC GCGAGGTGAT GAAACCCAAG AACGGCTATG CCGATTGGGA GGTGACGCAG
CTGCTGGCGA AGGCCATGGG CGCGGACTGG CATTATACCC ATCCGTCCCA GATCATGGAT
GAAATCGCGG AGACGACGCC CGGCTTCGCC AACGTCAACT ATGCGATGCT GGAAGAGCGT
GGCAGCGTGC AGTGGCCCTG CAATGACGCG GCCCCCGACG GGTCCCCGAT CATGCATATC
GATGGTTTTG TGCGCGGCAA GGGGCGGTTC ATCGTGACCG AATATATCGC CACCGAAGAA
CGCACCGGGC CGCGCTTCCC GCTATTGCTG ACGACGGGGC GCATCCTGTC GCAGTATAAC
GTGGGCGCGC AGACGCGGCG GACCGAAAAC GTGGTCTGGC ACGCCGAGGA TGTGCTGGAA
ATCCACCCCC ATGACGCCGA AGTGCGCGGC GTGAAAGACG GCGATTGGGT CAAGCTGGCC
TCGCGCACCG GAGAGACGTC CCTGCGCGCC ACGATCACCG ACAAGGTCGT GCCGGGGGTC
GTCTACACCA CCTTCCACCA CCCCGATACG CAGGCCAATG TCATCACCAC GGATCATTCC
GACTGGGCGA CGAACTGCCC GGAATACAAG GTGACGGCAG TGCAGGTGGG GCTGTCCAAC
GGCCCGACAG AATGGCAGCG CGCGTATAAC GCGCAGGCCG AAAAGTCGCG GCGCATCCAA
TCAAGTGACG GCGTGCGTGG GCGCGCGACG GCGGCGGAGT GA
|
|---|
| Protein sequence | MKDFIIPWDD RDMGTKAVDG APVTLTVDGF EVTVPEGTSV MRAASEIGMQ IPKLCASDNL
EAFGSCRLCV VEIEGRRGTP ASCTTPVAEG MVVRTQSSKV KKIRRGVMEL YISDHPLDCL
TCAANGDCEL QDMAGAVGLR DVRYEAPENA SLANHFEARK GDQPNPEWIP KDDSNPYFTY
DPAKCIACSR CVRACEEVQG TFALTMEGRG FDSRISAGGP DSDFLTSDCV SCGACVQACP
TATLQEKSVI ELGTPERSVV TTCAYCGVGC SFKAELNGDE LVRMTPYKHG EANRGHSCVK
GRFAYGYANH SDRILNPMIR DSIDQPWKEV SWEEAIGFAA DRMRGLQEKH GRKSIGVITS
SRCTNEETYL VQKLARGVFM NNNTDTCARV CHSPTGYGLG QTFGTSAGTQ NFDSVEQVDV
AIIIGANPTD AHPVFGSRLK KRVRAGAKLI VIDPRKTDVV RSAHIEAAHH LPLRPGTNVA
VVTAMAHVIV DEKIYDEQFI RERCDWNEFE EYAEFVRDVR HSPEMTEMLT GVPAEELRRA
ARLYATGGNG AIYYGLGVTE HSQGSTTVMG IANLAMMTGN IGREGVGVNP LRGQNNVQGS
CDMGSFPHEL PGYRHVKGDE VRALFESKWG VEIDPEPGLR IPNMLDSAVG GTFKGLYCQG
EDILQSDPDT HHVAAGLAAM ECVIVHDLFL NETANYAHVF LPGSTFLEKD GTFTNAERRI
NRVREVMKPK NGYADWEVTQ LLAKAMGADW HYTHPSQIMD EIAETTPGFA NVNYAMLEER
GSVQWPCNDA APDGSPIMHI DGFVRGKGRF IVTEYIATEE RTGPRFPLLL TTGRILSQYN
VGAQTRRTEN VVWHAEDVLE IHPHDAEVRG VKDGDWVKLA SRTGETSLRA TITDKVVPGV
VYTTFHHPDT QANVITTDHS DWATNCPEYK VTAVQVGLSN GPTEWQRAYN AQAEKSRRIQ
SSDGVRGRAT AAE
|
|---|
| |