| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2539 |
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| Symbol | |
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| ID | 3935002 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 2540632 |
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| End bp | 2543304 |
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| Gene Length | 2673 bp |
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| Protein Length | 890 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637904903 |
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| Product | ribonuclease E |
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| Protein accession | YP_510481 |
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| Protein GI | 89055030 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1530] Ribonucleases G and E |
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| TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.915754 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.197349 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAAAAA CAATGCTCAT CGATGCCACC CACGCGGAAG AAACCCGCGT TGTGGTGGCA
GATGGAACCA AGGTCGATGA ATTTGACTTT GAATCGCTAA ATAAGCGGCA ACTCGCAGGA
AACATATATC TGGCCAAGGT GACGCGGGTT GAGCCCTCGT TGCAGGCGGC CTTTGTGGAT
TACGGTGGCA ATCGCCACGG GTTCCTCGCG TTCTCGGAAA TTCACCCCGA TTATTATCAG
ATCCCCGTGG CCGACCGTGA AGCGCTTCTG GCCGAAGAAC GCGCCTATGC GGAACAGCAG
GCCCGGGAGG AGGAGGAGGA ATCCTCCAAA CCCAAGCGCC GTCGCAAGCG GCGTCGTGGT
GGTGACACCA AGGCCGAGGA GACTGGCAAT GACGCCGTGG CCAAAGGCAC ACCCAACGGC
ATGGATGTGG TCGATCTGGA AGCGGGGGAA GACGCGGCCG CATCCGATGA CGCGGATGTC
GAAGGCCTGT CGCCGATGGA GCTGGTGAAA GAAACGCCGG TGGAAGAGCC CGAGGGCGAC
GCCGACACGA CGGATGACGC GGACGCCGAT ACGGATGCTG ACACTGATAC AGATGCGGAT
ACGGACGACA GCGGCGACGA CAATTCCGAG GTTGTGGCCG ATGACGACGA CGTGGAGGAA
ATCCGCCCCG TCCGCAAACC ACGCCCGAAG AAGTACAAGA TCCAGGAGGT CGTTAAAGTC
CGCCAGATCA TGCTGGTGCA GGTCGTCAAG GAAGAGCGGG GCAACAAGGG GGCCGCGCTG
ACGACATATC TGTCCCTGGC CGGGCGCTAT TGCGTGTTGA TGCCCAACAC CGCGCGGGGC
GGCGGGATTT CCCGCAAGAT CACCAACGCC GCCGACCGCA AGAAGCTGAA AGACATCGCC
ACGGCGCTGG ATGTGCCCCA GGGCGCGGGC CTGATCGTGC GCACGGCAGG CAGCCAGCGC
ACCAAAGTCG AGATCAAGCG CGATTATGAA TATCTGCAAC GCCAATGGGA ACAGATCCGC
GAGCTGACGC TGAAATCCAT CGCGCCCGCA CCGATCTATC AGGAAGGCGA CCTGATCCAC
CGCACCATCC GCGACCTTTA TAACCGCGAT ATCGGCGAGG TTATCGTGGA GGGCGAGGCC
GGGTACCGCC ACGCCAAGGA CTTCATGAAG ATGATCATGC CGTCCCACGC CAAGAAGGTG
AAACGGCACG GCGGCGGGGT TCCGCTTTTC GCGAAATACA AGGTGGAATC GTATCTGTCG
GATATGTTCA ACCCGACCGT GCAGCTGAAA TCCGGCGGCT ATATCGTCAT CAACATCACC
GAGGCGCTGG TGGCTATCGA CGTGAACTCG GGCCGGTCCA CCAAGGAAGG CAGCATCGAG
GATACGGCGA CGAAAACCAA CCTGGAGGCC GCGGAGGAAG TGGCGCGTCA AGTGCGGTTG
CGTGACCTTG CCGGTCTGAT CGTCATCGAC TTCATCGACA TGGATGAACG CCGCAACAAC
AACGCCGTCG AGAAGCGCAT CAAGGACAAG CTGAAGACCG ACCGGGCGCG CATTCAGGTG
GGCCGGATTT CGACCTTCGG CCTGATGGAA ATGTCCCGCC AGCGCCTGCG CCCGGGTATG
TTGGAGGCCA CGACGCAGGC CTGCCACCAT TGCCACGGCA CGGGCCTCGT GCGCTCGGAT
GACAGTCTTG CGCTGTCGAT CCTGCGCCAG TTGGAAGAGG AAGGGACACG GGGCCGCGCC
CGCGAGGTTC TGCTGACTGC GCCCGTGGGC ATCGTCAATT TCCTGATCAA CTTCAAACGC
GACTATCTGG ACGCGATTGA GGCGCGCTCG GGCATGGCGA TCCGGATCGA GGCCGACGCG
AGCCTTGTCG TGCCGGACTA CAAGATCGAG AAGTTCAAGA CCGCCACCCG CAAGATCACC
GCCGTGGCCC CCGTCGTTTC CATGGACGCG GGCCTGATGG ATGACATCGA CGAAGATGCC
GGTGATGACG TCGTCGAAGA CGCGGATCAG GTCGATGAGG CGGCTGAAGC GTCTGAAGAC
GAGCAGCCGA GGAAAAAGCG CCGCCGCCGT CGTGGTGGCC GGGGCCGCCG TCGGACCTCC
GATGAGAATG GAGAGACCGG TGACAGCGCC GAGGACGGAT CAGCCGCTGC GGCTGTGCCG
GAGGAGGCGG CTGGAGCCGA CCCGTCAACC GATACACCGC CCGAGGCCAG CCCGGAGGGC
GAAGAGGAGC AGCCCAAAAA GCGCCGCCGC TCGCGCCGGG GTGGCCGGGG CCGCAAGTCG
TCTGAGGCGC AAGCCGAGAC GACGGATGAG GGCAATGGTG ACGCCATGGA GGCTCAGGAT
GCGCCAGCGG CAGAGCCAGC AGAGCCTGCG TCGGTGAGCA CGCCGGAGCC CGAGGTCGCG
GCTGACGCTG AGCCTGAGAT CACGCCGGAG CCGACCCCGG ACCCTGAGCC CGAGCCTCAG
CCCGAACGGG AGTTGGTTGC CGCCGATGCG TCGGTCGCCT CAGAGGAACC TGCCCAGGCG
GCCGAGCCAA CGCCGGAGCC CGAGGCCGCC CCCGAACCAA CCCCTGAGCC TGTCGCGGCA
GAGGCCACGC CCGAACCTGT CGCGGCCCAG GCGGCAGCGG AACCTGACGC CCCGGCCAAA
CCGAAACGGC GCGGATGGTG GTCGCGGGGC TGA
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| Protein sequence | MAKTMLIDAT HAEETRVVVA DGTKVDEFDF ESLNKRQLAG NIYLAKVTRV EPSLQAAFVD
YGGNRHGFLA FSEIHPDYYQ IPVADREALL AEERAYAEQQ AREEEEESSK PKRRRKRRRG
GDTKAEETGN DAVAKGTPNG MDVVDLEAGE DAAASDDADV EGLSPMELVK ETPVEEPEGD
ADTTDDADAD TDADTDTDAD TDDSGDDNSE VVADDDDVEE IRPVRKPRPK KYKIQEVVKV
RQIMLVQVVK EERGNKGAAL TTYLSLAGRY CVLMPNTARG GGISRKITNA ADRKKLKDIA
TALDVPQGAG LIVRTAGSQR TKVEIKRDYE YLQRQWEQIR ELTLKSIAPA PIYQEGDLIH
RTIRDLYNRD IGEVIVEGEA GYRHAKDFMK MIMPSHAKKV KRHGGGVPLF AKYKVESYLS
DMFNPTVQLK SGGYIVINIT EALVAIDVNS GRSTKEGSIE DTATKTNLEA AEEVARQVRL
RDLAGLIVID FIDMDERRNN NAVEKRIKDK LKTDRARIQV GRISTFGLME MSRQRLRPGM
LEATTQACHH CHGTGLVRSD DSLALSILRQ LEEEGTRGRA REVLLTAPVG IVNFLINFKR
DYLDAIEARS GMAIRIEADA SLVVPDYKIE KFKTATRKIT AVAPVVSMDA GLMDDIDEDA
GDDVVEDADQ VDEAAEASED EQPRKKRRRR RGGRGRRRTS DENGETGDSA EDGSAAAAVP
EEAAGADPST DTPPEASPEG EEEQPKKRRR SRRGGRGRKS SEAQAETTDE GNGDAMEAQD
APAAEPAEPA SVSTPEPEVA ADAEPEITPE PTPDPEPEPQ PERELVAADA SVASEEPAQA
AEPTPEPEAA PEPTPEPVAA EATPEPVAAQ AAAEPDAPAK PKRRGWWSRG
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