| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2533 |
|---|
| Symbol | prfB |
|---|
| ID | 3934996 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 2532747 |
|---|
| End bp | 2533874 |
|---|
| Gene Length | 1128 bp |
|---|
| Protein Length | 375 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637904897 |
|---|
| Product | peptide chain release factor 2 |
|---|
| Protein accession | YP_510475 |
|---|
| Protein GI | 89055024 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1186] Protein chain release factor B |
|---|
| TIGRFAM ID | [TIGR00020] peptide chain release factor 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.123616 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGGCCG AGACACAAGC CAATATCGAG AAGATCCGCA ATTCCCTGAC CCTTCTGGGG
CAGCGGATGG ACATAGAGAC CGCGCCCCAC CGGTTGGAGG AATTCAACGC CCGCGTCGAA
GATCCGAACC TTTGGAATGA TCCTGAGAAG GCGCAGAAAT TGATGCGCGA CCGGCAGGTG
CTCGTCGACA AGATGAAGCA GTACGAGACG ATCAGGCAGG GTGTGGACGA CAACGCCGAG
CTGATCGAGC TGGGAGAGAT GGAGGACGAT GCCGAGGTCG TGGCCGAGGC CGAAGCGGCT
TTGACGGCGC TGGTTGACGA GGCCGCCGCC AAGGAGCTTG AGGCGCTGCT GGATGGGGAG
GCCGACAGCA ACGACACGTT TCTTGAGATC AATTCGGGCG CGGGGGGCAC GGAAAGCTGT
GACTGGGCGT CGATGCTGGC GCGGATGTAC ACGCGGTGGG CCGAGAAGCA GGGCTATGAC
GTGGATCTGC AAAGCTTCAG CGCGGGCGAA GAGGCGGGGA TCAAATCCGC CGTCTACAAG
ATCAGCGGGC ACAACGCCTA TGGTTGGTTG AAGTCCGAGA GCGGCGTGCA CCGTCTGGTA
CGGATTTCAC CTTTCGACAG CGCCGCCAAG CGGCACACGT CTTTTACGTC GGTGAAGGTT
TATCCGGTCG TGGACGACAA CATCGAGATT GAGGTAAACC CCTCTGACAT CCGCATCGAC
ACCTATCGCT CGTCCGGGGC CGGTGGCCAG CACGTGAACA CCACGGATTC CGCGGTTCGT
ATCACCCACC ATCCGACCGG TATCGTGGTC ACAAGTTCGG AGAAATCCCA ACACCAGAAC
CGCGATATCG CCATGAAGGC GTTGAAATCG CGGCTCTATC AGATGGAACT GGATAAGCGC
TCGGCCAAGG TGAACGAGGT CCATGAGAAT GCGGGCGATG CGGGCTGGGG CAACCAGATT
CGATCCTATG TGTTGCAGCC CTACCAGATG GTGAAGGACC TGCGGACGGC TTTTGAAACC
TCCGACACGC AAGGGGTGCT GGACGGCAAT ATCGATGGGC TGATGGCGAG CGTCTTGGCG
ATGGACGTGT CCGGCAAGAG CCGGGCCGAG GCCCGGGGTG ATGACTGA
|
|---|
| Protein sequence | MRAETQANIE KIRNSLTLLG QRMDIETAPH RLEEFNARVE DPNLWNDPEK AQKLMRDRQV
LVDKMKQYET IRQGVDDNAE LIELGEMEDD AEVVAEAEAA LTALVDEAAA KELEALLDGE
ADSNDTFLEI NSGAGGTESC DWASMLARMY TRWAEKQGYD VDLQSFSAGE EAGIKSAVYK
ISGHNAYGWL KSESGVHRLV RISPFDSAAK RHTSFTSVKV YPVVDDNIEI EVNPSDIRID
TYRSSGAGGQ HVNTTDSAVR ITHHPTGIVV TSSEKSQHQN RDIAMKALKS RLYQMELDKR
SAKVNEVHEN AGDAGWGNQI RSYVLQPYQM VKDLRTAFET SDTQGVLDGN IDGLMASVLA
MDVSGKSRAE ARGDD
|
|---|
| |