Gene Jann_2517 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_2517 
Symbol 
ID3934980 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand
Start bp2515058 
End bp2515834 
Gene Length777 bp 
Protein Length258 aa 
Translation table11 
GC content64% 
IMG OID637904881 
Productpolysaccharide deacetylase 
Protein accessionYP_510459 
Protein GI89055008 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0726] Predicted xylanase/chitin deacetylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.197208 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.18394 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTATTC TTCACCGTAG AGCGTTGCTG TTGGGAACGG TGTCTGCCCT TGCAACGCCC 
TTCGTGTCGG TGGCCGCACG GGCGCAGAGC CTGCCGCAGA CGTTTGCCGG ACGCGGGCCG
ATCACCCGGG GCGAAGCCGC AACCGTCACG CGCATCCCGA CCGCGCAGCC CTTGGTTGCG
ATGACGTTTG ACGATGGCCC ACACCCCAAT CTGACGCCGC AATTGCTGGA TATGTTGCGG
GTCAGGGGCA TCCGCGCCAC GTTCTATGTG ATTGGCCGCA ATGCGGCGCG CTATCCGCAG
ATCCTGCAAC GGATGGTGGC TGAGGGCCAT GAGATCGGCA ACCATACATG GTCCCATCCC
AGTCTCCATG GTCACTCCGA TGCCTCGGTC CTCAGTCAGG TCGACCGGAC GAACCGCGCG
GTCTTTGATG CCGTGGGGCG TCCACCCGTT ACCATGCGTC CGCCCTATGG CAATCTTTAT
GATCGCCAAC GGCTGATGCT GTTTGAAACC CGTGCCATGC CAACGATTCT CTGGTCGGTG
GATACGCTGG ACTGGCAGCG CCCGGGGTCG TCCATCATCG CGCAGCGGGT TGTTGGTGGC
AGTCACACCG GCGCCGTGAT CCTGGCCCAC GACATCCACA GCGCCACGGT GCGCGCCATG
CCCACGGCCC TAGACGGGGT CACGGGGCGC GGGTTTCGGT TCGTCACAAT GTCTGAGCTG
ATCGGATGGC CCCGCTGGGA TCGCCGCCGG CTGCGTCTGG TGGAGGCTGC GTCTTAA
 
Protein sequence
MTILHRRALL LGTVSALATP FVSVAARAQS LPQTFAGRGP ITRGEAATVT RIPTAQPLVA 
MTFDDGPHPN LTPQLLDMLR VRGIRATFYV IGRNAARYPQ ILQRMVAEGH EIGNHTWSHP
SLHGHSDASV LSQVDRTNRA VFDAVGRPPV TMRPPYGNLY DRQRLMLFET RAMPTILWSV
DTLDWQRPGS SIIAQRVVGG SHTGAVILAH DIHSATVRAM PTALDGVTGR GFRFVTMSEL
IGWPRWDRRR LRLVEAAS