Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_2517 |
Symbol | |
ID | 3934980 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | - |
Start bp | 2515058 |
End bp | 2515834 |
Gene Length | 777 bp |
Protein Length | 258 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637904881 |
Product | polysaccharide deacetylase |
Protein accession | YP_510459 |
Protein GI | 89055008 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0726] Predicted xylanase/chitin deacetylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.197208 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.18394 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTATTC TTCACCGTAG AGCGTTGCTG TTGGGAACGG TGTCTGCCCT TGCAACGCCC TTCGTGTCGG TGGCCGCACG GGCGCAGAGC CTGCCGCAGA CGTTTGCCGG ACGCGGGCCG ATCACCCGGG GCGAAGCCGC AACCGTCACG CGCATCCCGA CCGCGCAGCC CTTGGTTGCG ATGACGTTTG ACGATGGCCC ACACCCCAAT CTGACGCCGC AATTGCTGGA TATGTTGCGG GTCAGGGGCA TCCGCGCCAC GTTCTATGTG ATTGGCCGCA ATGCGGCGCG CTATCCGCAG ATCCTGCAAC GGATGGTGGC TGAGGGCCAT GAGATCGGCA ACCATACATG GTCCCATCCC AGTCTCCATG GTCACTCCGA TGCCTCGGTC CTCAGTCAGG TCGACCGGAC GAACCGCGCG GTCTTTGATG CCGTGGGGCG TCCACCCGTT ACCATGCGTC CGCCCTATGG CAATCTTTAT GATCGCCAAC GGCTGATGCT GTTTGAAACC CGTGCCATGC CAACGATTCT CTGGTCGGTG GATACGCTGG ACTGGCAGCG CCCGGGGTCG TCCATCATCG CGCAGCGGGT TGTTGGTGGC AGTCACACCG GCGCCGTGAT CCTGGCCCAC GACATCCACA GCGCCACGGT GCGCGCCATG CCCACGGCCC TAGACGGGGT CACGGGGCGC GGGTTTCGGT TCGTCACAAT GTCTGAGCTG ATCGGATGGC CCCGCTGGGA TCGCCGCCGG CTGCGTCTGG TGGAGGCTGC GTCTTAA
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Protein sequence | MTILHRRALL LGTVSALATP FVSVAARAQS LPQTFAGRGP ITRGEAATVT RIPTAQPLVA MTFDDGPHPN LTPQLLDMLR VRGIRATFYV IGRNAARYPQ ILQRMVAEGH EIGNHTWSHP SLHGHSDASV LSQVDRTNRA VFDAVGRPPV TMRPPYGNLY DRQRLMLFET RAMPTILWSV DTLDWQRPGS SIIAQRVVGG SHTGAVILAH DIHSATVRAM PTALDGVTGR GFRFVTMSEL IGWPRWDRRR LRLVEAAS
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