| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2504 |
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| Symbol | |
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| ID | 3934963 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 2503013 |
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| End bp | 2505271 |
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| Gene Length | 2259 bp |
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| Protein Length | 752 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637904864 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_510446 |
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| Protein GI | 89054995 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.234774 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACAAC CAGATCAAGA GGCGCAGGCG CTGGCCGCCG GTTTTTCGGC AGACGCGGCC
AAAACACGTC TGGCGGAACT GGCAAAGCGC CTCTCGGACG CCAACACTGC CTACCACGCC
GCAGACGCCC CGGATCTGAG CGATGCCGAT TACGACGCCC TGAAGCGAGA GAATGCCGCG
ATCGAGGCCG CATTTCCGGA CCTCAAGCGC GCCGACAGTC CCAGTGATCA GGTCGGTGCG
GCCCCTGCGG AGGGGTTCTC GAAACTCACT CACACCCAAC GCATGCTGTC GCTCGCCAAC
GCGTTTGACG CGGGCGATGT CCCTGATTTT GTGGCAGGTA TTCGTCGCTA CCTGAACCTT
GGCGCGGAGG CGGATCTTCC CTTCACCGCC GAGCCCAAGA TTGACGGGCT GTCGCTGTCA
CTGCGATACG AGGACGGCCA GCTGGTCTCT GCGGCCACAA GGGGCGACGG GGCCATCGGC
GAAAACGTCA CGGCAAATGC GCGCACCATC GATGATATTC CGCAAACCCT GACGGATGCG
CCAGACGTTC TTGAGGTGCG GGGCGAGGTC TACATGAGCC ACGCGGACTT CGCCGCTCTG
AACGACCGCC AGGCAGAGGC CGGGGCCAAG ACCTTCGCCA ATCCGCGCAA CGCCGCCGCC
GGATCGCTGC GGCAGTTGGA TGCCTCCATC ACCCGATCCC GCCCGCTGAG GTTCTTCGCC
TACGCCTGGG GAGAGGTGAG TGCGCCCCTT GCGGCCACCC AATCGGGCGC GCTCAACACG
CTGAAAACAC TTGGATTCCA GATCAACGAC CGCACCAAGA CGTGCCATAG CGCCGAGGAC
ATGCTGGCCC ATTATGCGAG CATTGAGCAG GACCGTGCCG ATCTGGGCTA TGACATCGAC
GGCGTGGTCT ACAAGATCGA CGATCTTGAC TATCAGCGCA GACTTGGCAT GCGGTCCACG
ACGCCGCGAT GGGCGATTGC CCACAAATTC CCGGCTGAAC TGGCCTGGAC CACGTTGGAA
GCCATCGACA TTCAGGTTGG CCGCACCGGT GCGCTCAGCC CCGTGGCGCG CCTGACGCCT
GTGACGGTCG GCGGCGTTGT TGTGTCCAAC GCCACGCTGC ACAATGAAGA CTATATTGCC
GGCCGCGATG CGAACGGAGG TCCCATCCGG GACGGCAAGG ACATCCGCGT CGGCGACCGT
GTTCAGGTCT ACCGCGCGGG CGACGTGATC CCGAAGGTCG CTGATGTAGA CCTCGCAAAA
CGCCCCGAAA ACACAGCGAA ATATGCCTTT CCGGACCATT GCCCCCAGTG CCAGTCCGAG
GCGATCCGGG AGGAGGGCGA TGCCGTGCGT CGCTGCACCG GCGGCCTGAT CTGCCCGGCG
CAGGCTGTGG AAAAGCTGAA GCATTTCGTC AGTCGCGCGG CGTTTGACAT AGATGGGCTC
GGCGCCAAAC AGGTGGAGGC CTTCTACCTT GATGGCTGGA TTGCCGAACC CGCAGACATC
TTCCGCCTGA AGGAGAATTA TGGCGAGGGC ATGAAACAAC TCAGGAACCG CGAGGGGTGG
GGCGAGAAAT CGGCGACCAG CCTGTTCAAC GCAATCGACG ACAAACGCAG CATCGCGTTG
CATCGTCTGA TCTTCGCGCT CGGTATCCGC CATGTGGGGG AGGTTGCGGC CTCGGACCTT
GCGCGCCATT TCACGACGTG GAAGGCCTTG GCAGAGATCG TGGACCAAGC CGCGCCCGCC
GCCGAGGCGC ATCGCCGCGC GGAAGACGCC GTCCTGGCCG AGCGGAAGGC CGCCGCCGAT
GAGGGCCGCC GCGCCTCCCT GCAACCCCAA CGCGACAAGG CCTGGGCCGA CACGCCGGAG
CCTGCAAAGG CAGCCTGGGA CGACCTGACC GGCATCGACG GCATCGGTGC GACGGTCGCG
GTGTCACTGG TCACGACCTT CCAGCAGGCC CGCGAGCGCG CCTCCATCGA CCGTCTGATC
ACGGAACTCA CCGATATCCA GCCGCCTGAG GCCCGCGCGA CCCAAAGTGC GGTTGCGGGC
CTCACCGTGG TTTTTACGGG CGCACTGGAG CGCATGACGC GGGCGGAGGC CAAGGCCCGG
GCAGAGGCGA TGGGCGCCAA GGTCTCAGGC TCCGTTTCCG CCAAGACAGA TATCGTTGTG
GCGGGACCGG GGGCGGGGTC AAAAGAGAAG AAAGCCAAGG ATTTAGGGAT TGAACTTCTG
ACCGAAGAAC AATGGCTGGA CCGCATCGGC GATGCCTGA
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| Protein sequence | MSQPDQEAQA LAAGFSADAA KTRLAELAKR LSDANTAYHA ADAPDLSDAD YDALKRENAA
IEAAFPDLKR ADSPSDQVGA APAEGFSKLT HTQRMLSLAN AFDAGDVPDF VAGIRRYLNL
GAEADLPFTA EPKIDGLSLS LRYEDGQLVS AATRGDGAIG ENVTANARTI DDIPQTLTDA
PDVLEVRGEV YMSHADFAAL NDRQAEAGAK TFANPRNAAA GSLRQLDASI TRSRPLRFFA
YAWGEVSAPL AATQSGALNT LKTLGFQIND RTKTCHSAED MLAHYASIEQ DRADLGYDID
GVVYKIDDLD YQRRLGMRST TPRWAIAHKF PAELAWTTLE AIDIQVGRTG ALSPVARLTP
VTVGGVVVSN ATLHNEDYIA GRDANGGPIR DGKDIRVGDR VQVYRAGDVI PKVADVDLAK
RPENTAKYAF PDHCPQCQSE AIREEGDAVR RCTGGLICPA QAVEKLKHFV SRAAFDIDGL
GAKQVEAFYL DGWIAEPADI FRLKENYGEG MKQLRNREGW GEKSATSLFN AIDDKRSIAL
HRLIFALGIR HVGEVAASDL ARHFTTWKAL AEIVDQAAPA AEAHRRAEDA VLAERKAAAD
EGRRASLQPQ RDKAWADTPE PAKAAWDDLT GIDGIGATVA VSLVTTFQQA RERASIDRLI
TELTDIQPPE ARATQSAVAG LTVVFTGALE RMTRAEAKAR AEAMGAKVSG SVSAKTDIVV
AGPGAGSKEK KAKDLGIELL TEEQWLDRIG DA
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