Gene Jann_2487 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_2487 
SymbolaroB 
ID3934945 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand
Start bp2483404 
End bp2484516 
Gene Length1113 bp 
Protein Length370 aa 
Translation table11 
GC content66% 
IMG OID637904846 
Product3-dehydroquinate synthase 
Protein accessionYP_510429 
Protein GI89054978 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0337] 3-dehydroquinate synthetase 
TIGRFAM ID[TIGR01357] 3-dehydroquinate synthase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.13771 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0143197 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGATA CGGTCCGGGT CGAGTTGGGC GCGCGCGCCT ATGATGTTGA AATCGGGGCA 
GGTCTTATCG CCTCCGCCGG GGCCCGCATC GCGCCGCTGC TGTCGCGGCC CAAAGTGTGG
ATCGTCACGG AAGAGACGGT CGCCGCCCTG CATATGGATG CCCTGCGCGC CGGTCTTGAC
GCCGCCAATA TCGCCAGCGA GGCCCTGGTT CTGCCCCCCG GCGAGGCCAC CAAATCCTGG
CCGCATCTGC AACGCATCGC CGATTGGCTC CTGTCCGAGC GGGTGGAGCG CGCGGATATC
GTGATTGCCT TCGGCGGCGG CGTGATCGGT GATCTTGCGG GCTTTGCCGC CGCCATCCAC
CGGCGCGGCA TCCGTTTTGT GCAGATCCCC ACGTCACTTT TGGCGCAGGT TGACAGCTCT
GTCGGTGGCA AGACCGGTAT CAACGCGCCA CAAGGCAAGA ACCTGATCGG CGCGTTTCAC
CAACCGTCGC TGGTGCTGGC CGACATCGAC GTTCTGGGCA CACTGATGCC GCGCGATTTT
CTGGCGGGCT ACGGCGAAGT GGCGAAATAC GGTATGCTCG GCGACGCCCC CTTCTTCGAG
TGGCTGGAGG CCAACGGCCC CGCCATGGCC AAGGGTGACC CCGCGCTGCG GCAAGAGGCG
GTGCGCCGCT CCGTCCAGAT GAAGGCAGAT ATCGTCGCCC GCGATGAGAC GGAGCAGGGT
GATCGCGCGC TCCTCAACCT TGGCCACACG TTTTGTCATG CCCTGGAAGC CGCCACGGGG
TATTCCGACC GGCTGCTGCA TGGCGAAGGG GTCGCCATTG GCTGCGCCTT GGCGTTTGAG
CTATCGGCCC GTCTGGGCCT GTGTTCGCAA GAAGACCCCA GCCGCGTGCG CGCCCATCTG
GCCGCCATGG GCACAAGGCG CGATCTGTCG GACATTCCCG GTGACCTGCC CGACGCAGAC
GCCCTCATCA CGTTGATGGG CCAGGATAAA AAGGTCGTGG CAGGGCAACT CCGCTTCATC
CTCGCGCGCG GCATCGGCCA CGCGTTTGTC ACTGCCGACG TGCCCACAGA TGCGGTCAAA
GCCCTCCTCA CGGACGCGCT CGCCGGTCGA TAG
 
Protein sequence
MSDTVRVELG ARAYDVEIGA GLIASAGARI APLLSRPKVW IVTEETVAAL HMDALRAGLD 
AANIASEALV LPPGEATKSW PHLQRIADWL LSERVERADI VIAFGGGVIG DLAGFAAAIH
RRGIRFVQIP TSLLAQVDSS VGGKTGINAP QGKNLIGAFH QPSLVLADID VLGTLMPRDF
LAGYGEVAKY GMLGDAPFFE WLEANGPAMA KGDPALRQEA VRRSVQMKAD IVARDETEQG
DRALLNLGHT FCHALEAATG YSDRLLHGEG VAIGCALAFE LSARLGLCSQ EDPSRVRAHL
AAMGTRRDLS DIPGDLPDAD ALITLMGQDK KVVAGQLRFI LARGIGHAFV TADVPTDAVK
ALLTDALAGR