Gene Jann_2467 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_2467 
Symbol 
ID3934924 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand
Start bp2461788 
End bp2463875 
Gene Length2088 bp 
Protein Length695 aa 
Translation table11 
GC content61% 
IMG OID637904825 
Productoligopeptide/dipeptide ABC transporter, ATP-binding protein-like 
Protein accessionYP_510409 
Protein GI89054958 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
[COG4608] ABC-type oligopeptide transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
[TIGR02323] phosphonate C-P lyase system protein PhnK 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.380053 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0115313 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGATC GCACCCCTTA CGACGGCCCG ATCCTGGAAA TCGAAAACCT CTCGATCTCG 
TTCTTCACCC GTCTGCGTGA GATCCCCGCG GTGATGGATT TCTCCTGCAC CGTGATGCCC
GGCGAGGCGA TGGGATTGGT CGGCGAAAGC GGGTGCGGCA AGTCTACCGT GGCCCTTGGC
GTGATGCAGG ATCTGGGCGT GAACGGGCGC ATCGTTGGCG GCACGATCAA GTTCAAGGGC
CGCGACCTGA ACAAGATGTC CGATGAGGAG CTGCGCGACC TGCGCGGGTC CGAAATTGCG
ATGATTTATC AAGAACCTAT GGCGTCCCTG AACCCGGCCA TGAAGATCAG CAAACAGCTG
ATGGAAGTGC CGATGATCCA TGAAGGCAAG TCCGAGAAAG AAGCCTATCA ACTGGCGCTG
GAGGTGGTCA CAGACGTCCG CCTGCCGGAC CCGGAGCGGA TGCTGAAAAG CTATCCGCAC
CAACTCTCCG GCGGTCAGCA ACAGCGCATC GTGATCGCTA TGGCCTTGAT GTCAAAGCCC
TCTTTGCTGA TCCTGGACGA GCCGACGACC GCCCTCGACG TGACAGTTGA GGCCGGGATC
GTGGACCTCG TGAAAGGTCT GGGGGAGAAA TACGGCACCT CCATGCTGTT CATCTCCCAC
AACCTCGGCC TGGTGCTGGA AACCTGTGAC CGCCTCTGCG TCATGTATTC CGGCGAAGCG
GTGGAGACTG GCTCTATTGC CGACGTCTTC GACAAGATGC AGCACCCCTA TACGCAGGCC
CTTTTCCGCT CTATCCCCTT GCCCGGCGCG GATAAAAACG CCCGTCCGCT GATCGCCATT
CCCGGCAACT TCCCCCTGCC CCATGAGCGT CCCCCCGGCT GCAATTTCGG CCCGCGCTGC
AACTATTTCG AGGACGGTCG CTGCAATGTC GGCGATATCA AGATGGCCGA GGTTTTGGGC
GATGATCGCC ACGCCACGCG CTGCCTGAGA TTTCAGGAGA TCGACTGGAT GGCTCCGCCC
GAAGTCGCCG CCGCCACCGC GAAGGCCCCC ATCGGCGACG TGGTCCTGAA AATCGACAAC
CTCAAGAAGT ATTATGAGGT CGCGGCCAAT GCCCTGTTCG GCGGCGGTGA CAAGAAAGTT
GTCAAAGCAA ATGAGACACT TAGCTTTGAG GCGCGCGAGA GCGAAACACT CGCCATCGTG
GGCGAATCCG GGTGCGGCAA GTCCACCCTC GCCAAGGTTC TGATGGGGCT GGAGACGGCC
ACCGACGGCG CCATCGTCAT GGGCAATCAG GAGATCCAGG GCACGCCGAT TGAAGAGCGT
GACACCAAGA CCGTGTCGAA CGTGCAGATG GTGTTCCAGA ACCCGTTTGA TACCCTCAAC
CCGTCCATGA CCGTGGGCCG CCAGATCATC CGCGCGCTGG AGGTCTTCAA GATCGGCGAC
AGCGACGCGG ATCGCAGGAC CCGGATGCTG GAACTGCTGG ATCTGGTGAA GCTGCCCCGC
GCCTTCGCCG ACCGAATGCC AAGGCAGCTG TCGGGCGGCC AGAAACAGCG GGTTGGCATC
GCGCGCGCCT TCGCGGGCGA CGCGAAAATT GTCGTTGCAG ATGAGCCGGT TAGTGCCCTG
GACGTGTCCG TTCAGGCCGC CGTGACGGAC CTGCTGATGG AGATCCAGCG GCGGGAAAAG
ACGACGCTTC TGTTCATCTC CCACGACCTC TCCATCGTGC GTTACCTCAG CGACCGGGTG
ATGGTCATGT ATCTGGGTCA CGTCGTGGAA CTTGGCTCCA CAGAGCAGGT TTTCAGCCCC
CCCTATCATC CATACACGGA GGCGCTTTTG TCCGCCGTGC CCATCGCGGA CACGTCGGTG
GAGAAGAAAC ATATCGTGCT GGAAGGCGAC ATCCCCTCGG CCATGAACCC GCCCTCAGGC
TGCCCGTTCC AGACGCGGTG CAACTGGAAA AGCGACGTGC CCGGTGGCCT GTGCGAAAGT
CAGGTGCCAC CGATGAAGAC ATTGGCCGAT GGGCATCAGA TCAAGTGCCA TCTGGCCGAG
GACGTGCTGG CGCGGATGGA TCCGGTGATC AAGATCGCGG CGGAATGA
 
Protein sequence
MADRTPYDGP ILEIENLSIS FFTRLREIPA VMDFSCTVMP GEAMGLVGES GCGKSTVALG 
VMQDLGVNGR IVGGTIKFKG RDLNKMSDEE LRDLRGSEIA MIYQEPMASL NPAMKISKQL
MEVPMIHEGK SEKEAYQLAL EVVTDVRLPD PERMLKSYPH QLSGGQQQRI VIAMALMSKP
SLLILDEPTT ALDVTVEAGI VDLVKGLGEK YGTSMLFISH NLGLVLETCD RLCVMYSGEA
VETGSIADVF DKMQHPYTQA LFRSIPLPGA DKNARPLIAI PGNFPLPHER PPGCNFGPRC
NYFEDGRCNV GDIKMAEVLG DDRHATRCLR FQEIDWMAPP EVAAATAKAP IGDVVLKIDN
LKKYYEVAAN ALFGGGDKKV VKANETLSFE ARESETLAIV GESGCGKSTL AKVLMGLETA
TDGAIVMGNQ EIQGTPIEER DTKTVSNVQM VFQNPFDTLN PSMTVGRQII RALEVFKIGD
SDADRRTRML ELLDLVKLPR AFADRMPRQL SGGQKQRVGI ARAFAGDAKI VVADEPVSAL
DVSVQAAVTD LLMEIQRREK TTLLFISHDL SIVRYLSDRV MVMYLGHVVE LGSTEQVFSP
PYHPYTEALL SAVPIADTSV EKKHIVLEGD IPSAMNPPSG CPFQTRCNWK SDVPGGLCES
QVPPMKTLAD GHQIKCHLAE DVLARMDPVI KIAAE