| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2464 |
|---|
| Symbol | |
|---|
| ID | 3934921 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 2458640 |
|---|
| End bp | 2459749 |
|---|
| Gene Length | 1110 bp |
|---|
| Protein Length | 369 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637904822 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_510406 |
|---|
| Protein GI | 89054955 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.189691 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.00140188 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGGGGCTT TCATCCTGCG CCGGACCGGC GTGATGATCC TGACCGCGCT TTGCCTGACA
TTGGTGGTGT TTTTCCTCAC CAACCTCTAC CCGAACCTGG AAAAGCTGGC GAAAACCCAG
GGCAATGCCC GCATGACCGA CGACGAAGTC GTCAGTTGGC TGGATCGCAA CGGCTATGGT
GGGCCCTTGC TGGTGCGCTA CGGCGAATGG TTGGGCATCG TGCCCGGCTG GACCCGCGAA
GATCCCAACA CCGGAGAGAT CACCGGGCGC TGCATCGATT TCGGCATGGA CCCCGCGGAC
GCCCCCACCC GCTGCGGGCT GTTGCAGGGC GATCTGGGCT TTTCGACCGT TTCCGATGAA
GACGTTGCCA ACGTGCTGCC CACCCGCCTT CTGCTGACCC TGAAACTCAT GGGCTATGCC
TTTGGCCTGA TGGTGCCCGC CGCCCTTCTG GTGGGTGTGC TGGCGGGGAT GCGGGAGGGC
TCTCGCCTCG ACCGTTCGCT GTCGACCGTC TCCATCGCCT CGACCGCCAC GCCGGAATAT
GTGTCGGGTG TGATTTTCAT CGTGCTCTTT GCCTCCACCA CGGCCGGCAT GTCAGGCGCG
CTGACGGAAT GGGGCTGGCT TGGCGGCGAT GGCTGGCTCG GCGACCGCCG CACGCTGTTT
CTGGGCTCTG CCCGCTCGGC GATGGAAGAC ATCACCTTCT GGAACTTCAC CCTGCCCGTC
GTCACCATCG CGCTCTACGG CATGGGCTAC ATTGCCCGCA TGACCCGTGC GTCGATGGCC
GAGGTGATGA CCGCGCAATA TATCCGCACG GCACGCCTGA AGGGTGTCAG CTTCCGTAAC
ATCGTCATGA AACACGCGCT CCGCAACGCG CTGATCGCGC CCTTCACCGT CATCATGCTG
CAATTCCCGT GGCTTCTGAC CGGCGTGGTG ATCGTGGAGA CGTTGTTCAA CTACAACGGC
TTCGGCTGGA CCATGGTGCA GGCGGCGTCG AACAACGATA TCGAGCTGCT TCTGGCCTGC
TCCATCGTCG CGGTCTTCGT GGTGCTGCTG ACCCAGCTGA TCTCGGATAT CGGCTACGTC
TTCCTCAACC CCCGCATTCG TATCGCGTGA
|
|---|
| Protein sequence | MGAFILRRTG VMILTALCLT LVVFFLTNLY PNLEKLAKTQ GNARMTDDEV VSWLDRNGYG
GPLLVRYGEW LGIVPGWTRE DPNTGEITGR CIDFGMDPAD APTRCGLLQG DLGFSTVSDE
DVANVLPTRL LLTLKLMGYA FGLMVPAALL VGVLAGMREG SRLDRSLSTV SIASTATPEY
VSGVIFIVLF ASTTAGMSGA LTEWGWLGGD GWLGDRRTLF LGSARSAMED ITFWNFTLPV
VTIALYGMGY IARMTRASMA EVMTAQYIRT ARLKGVSFRN IVMKHALRNA LIAPFTVIML
QFPWLLTGVV IVETLFNYNG FGWTMVQAAS NNDIELLLAC SIVAVFVVLL TQLISDIGYV
FLNPRIRIA
|
|---|
| |