Gene Jann_2416 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_2416 
Symbol 
ID3934873 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand+ 
Start bp2414791 
End bp2415369 
Gene Length579 bp 
Protein Length192 aa 
Translation table11 
GC content59% 
IMG OID637904774 
ProductTetR family transcriptional regulator 
Protein accessionYP_510358 
Protein GI89054907 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.363583 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTTTTTGC AGCACGGATT TCTAGGCACC AACATGGATG TGATCGCGGA CACGGCGGGT 
GTGTCCAAGC AAACGGTCTA TGCGCATTTC AAATCAAAGG AGGCGCTGTT CATCGACGTC 
GTGGAGGCGA TGACCGGCGG TGCAGCCGAG GAAATCGGCG AAGATATCGA AGACGTCTTT 
GGGGACCGGA AGGCGGAGGA TTATCTGCTG GAAGTAGCCA TCGACCAACT GACGGTCGTT 
CTGACACCCC GCCTGATGCA GTTGCGCCGG ATGGTCATTG GCGAAGTTGA ACGGTTCCCC 
GAACTGGGCC GATCCCTCTA TGTCAACGGG CCGATACGAT CCATCACCCG GCTCACGCGG 
GCATGTGCGC ATTACACGCG GATCGGGGAA TTGATCACGC CAGACCCACA GGCCGCCGCG 
ACCCAATTCA ACTGGATCGT GATGGGCGCA CCAACAAACG CCGCCATGTT ATTGGGGGAT 
GCAGGGATTC CGACCAGCGC TCAGCTCCAG GCCCATGCGA CGGAGGCGGT TCGGATTTTT 
CTATGCGCCT ATGGGGCAAA GCAGATGCAC CCGCGCTGA
 
Protein sequence
MFLQHGFLGT NMDVIADTAG VSKQTVYAHF KSKEALFIDV VEAMTGGAAE EIGEDIEDVF 
GDRKAEDYLL EVAIDQLTVV LTPRLMQLRR MVIGEVERFP ELGRSLYVNG PIRSITRLTR 
ACAHYTRIGE LITPDPQAAA TQFNWIVMGA PTNAAMLLGD AGIPTSAQLQ AHATEAVRIF 
LCAYGAKQMH PR