Gene Jann_2404 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_2404 
Symbol 
ID3934861 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand
Start bp2404422 
End bp2405369 
Gene Length948 bp 
Protein Length315 aa 
Translation table11 
GC content60% 
IMG OID637904762 
Productinner-membrane translocator 
Protein accessionYP_510346 
Protein GI89054895 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.72307 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCAAAA CCCTCCGCCA ATCCGGGACG CTTCTGGGCG TCTTTGCGAT CATCGCCTTC 
TTCGCCATCC AGCTGCCCGA TACGTTCCTG ACACCGCGCA ACCTGATCAA CATCTCGCAG
CAATTATCGA TGCTGGCCGT TGTTGCCGCG ACGATGACCT TCGTGATGGT GATGGGCGAT
TTTGATCTGT CGGTCGGCTC CATGGCAAGT CTTGCGGGGA TCGTCGCCGC CACGCTGTTC
GCCATGGGAT ATCCGGTCGG GGCTGGCATT AGCGTGGCCC TTCTGGTGGG CCTTGCGGGG
GGGCTGTTCA ACGGGTTCCT CGTCTCGATC ATCGGCATCC TGCCGTTCGT GGCAACACTT
GGCACGTTGA CCGTTTTCAG TGGCCTGGCC TTCCTGATCA GCGACGGAAG AACCATCTTT
GGTCGTGATA TTCCGCCCAC ATTTTCGGGT TTTGCCCGGG GCGGGATCGA GGCGGGCAAC
ATCACGCTTC CCTACCTGAC GATCACCGCG GGCATTGTCA TTCTCGTGTG CTGGTTCACG
CTGGAGCAGA CGACGTTCGG CCGCAGGCTC TATGCCATCG GCGGAAACAA GGAAGCCGCA
CATCTGGCCG GTATCAAAGT CAAACGCCTG CGCCTGATCG CGTTTGGACT GACCGGCTTT
GGGGCGGCCT GGGCGGGATT GATGTATGCC GCCCGCGTTG CATCGGCGAA CCCGACCCAG
GGCAGTGGCT TGATGCTGGA TGCCATCGCC GCCGTATTTC TTGGCATGAC CATGAGCCGC
CAGGGCGAGC CGAGGGTCAT CTACACGCTC GTGGGCGTCC TGATCCTTGG CATCCTCGAC
AACGGGCTGA CGCAACTTCA GGTGGACAGC TACATCCGCG AAATTCTGGT GGGCCTGATC
GTGATTGCAG CCGTTGCAAC GGCCTCAATG TCCAAAAACA GGCGTTAG
 
Protein sequence
MIKTLRQSGT LLGVFAIIAF FAIQLPDTFL TPRNLINISQ QLSMLAVVAA TMTFVMVMGD 
FDLSVGSMAS LAGIVAATLF AMGYPVGAGI SVALLVGLAG GLFNGFLVSI IGILPFVATL
GTLTVFSGLA FLISDGRTIF GRDIPPTFSG FARGGIEAGN ITLPYLTITA GIVILVCWFT
LEQTTFGRRL YAIGGNKEAA HLAGIKVKRL RLIAFGLTGF GAAWAGLMYA ARVASANPTQ
GSGLMLDAIA AVFLGMTMSR QGEPRVIYTL VGVLILGILD NGLTQLQVDS YIREILVGLI
VIAAVATASM SKNRR