| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2330 |
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| Symbol | |
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| ID | 3934786 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 2336312 |
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| End bp | 2338960 |
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| Gene Length | 2649 bp |
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| Protein Length | 882 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637904688 |
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| Product | TRAP transporter, 4TM/12TM fusion protein |
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| Protein accession | YP_510272 |
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| Protein GI | 89054821 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0740159 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGATC AAGGTCAGGA TCAAACCGGC GGGAAGCGCC AATTCTCCGA TGAAGAGCTC
CAGGATCTGG TGGCCAGCAC CGATAGCGGC GCGCGCAATC CCAGCAACCG GTATGTCGCC
CTTCTGATCG CGGGCATCGC CCTTGTCTGG TCGCTGTTCC AACTGTGGAT CGCGCAGCCG
CAATTGTGGT TTGCCGAATA CATCTCTGCG ATGAACTCCA CCCAGACGCG GCCCCTGCAC
CTGTTCTTCG CCATCGTCCT GGCGTTTCTG GCCTATCCGG CCTTCAAGAA TTCCCCGCGC
AATTACGTGC CCTGGTACGA TTGGGTGCTT CTGGCCGTCG GTGCCTTCAC CACGTTCTAC
GTCTTCTGGG CGTCTGACGA GTTGGCGATG ACCGCCCGCT CCGGCCTGCC GACGCAGTTT
CAGGTGATCC TGGGTGCTGT CGGCATCGTG TTGCTGCTGG AGGCCAGCCG TCGCGCGCTT
GGCCCGGCAC TGACCATCGT CGGCTCCCTG TTCCTTCTCT ATGCCTATTT CGGGCAGGGC
GCGCTGATCC CGGACCTGAT CTCCCACGAA GGCCTATCCT TCACGTCCCT CATCAACGCC
CAATGGCTGG ATACCGGCGG TGTCTTTGGC ATTCCGCTGG GGGTCTCGAC GGCGTTCGTC
TTCCTCTTCG TCCTCTTCGG CTCGCTGCTG GATAAGGCGG GCGCGGGCAA TTACTTCATC
AAGCTGGCCT TCGCGGGTCT GGGGCACCTG CGCGGTGGCC CGGCCAAGGC GGCAGTCGTG
GGCTCTGCCA TGACCGGCCT GATCTCCGGC TCCTCCATCG CCAACGTGGT CACCACCGGC
ACGTTCACCA TCCCGCTGAT GAAGCGCGTG GGCTTCACCG CTGAACAAGC GGGCTCGGTG
GAGGTCGCCT CCTCCGTCAA TGGCCAGATC ATGCCGCCCG TCATGGGCGC GGCGGCCTTC
CTGATGGTGG AATTCATCGG CATTTCCTAC GTCGAAGTCA TCAAACACGC CTTCATCCCG
GCGGTCATCT CCTACATCGC GCTGGTCTAT ATCGTGCATC TGGAGGCGCT GAAAAAGGAC
ATGCCCGCGT TGGGGCAGGC CAAAAGCTTC TCGGGCATGT TGATCAAGTT CTTCCTCGGC
TTCGTAGTCG CCGGGATCGG CTTCACCGCA CTGATCTACG CGGTGGGCTT CCTGCGCGAC
ACCGTGCCCG GCGGCACCGG CCCGATCATG ATGGCGCTTC TGGCGGCGGT TTATGTCTGG
CTGGTCGCCA TCGCGTCCCG CAAGCCCGAC CTGGAAGTCG ACGACCCGAA TTCCGAAGAG
ATCAAGCTGC CAGAGGTCAA GGACATCTAC GCCACGGGCC TGCATTACGT GCTGCCCATC
GTCGTTCTGG TCTGGTTCCT GATGGTGGAG CGGCAATCGC CCGCCCGCTC GGCCTTCTTC
GCCACCTCCC TGATGATCGG CATCATCGTC ACGCAACGCC CCCTGAAAGC GCTGTTCCGG
GGAGAGGCCG CGCGCATCGC CTCTGAATTC AAGGCAGGTC TTGTCGATCT GCGCGAAGGT
CTCATCGCGG GCGCGCGCAA CATGATCGGC ATCGGTGTGG CCACGGCGGC GGCGGGTATC
ATCGTGGCCA CGGTCACGCG CACGCCCATC GGCACGGAAC TTGCGGGGCT GGTTGAACTG
CTCTCCGGCG GCAACCTGTT CCTGATGCTG TGCCTTGTGG GTTTGTTCTC CCTCATCCTC
GGGATGGGCC TGCCCACCAC GGCCAACTAC ATCGTGGTGT CCTCGCTGAT GGCGGGTGTG
GTCGTGTCGC TCGGCGCACA GGAAGGCCTG ATCGTGCCGC TGATCGCCGC CCACCTCTTC
GTGTTCTATT TCGGGATCAT GGCGGATGTG ACGCCGCCCG TGGGCCTTGC CAGTTTCGCC
GCGGCGGCGG TGTCCGGCGG CGACCCGATC AAGACCGGCT TCACGGCGTT CTTCTACTCC
TTCCGCACCG TGGCCCTGCC GTTCCTGTTC ATCTTCAACC CCACGCTGAT CCTTTACGGC
GTCGATCTGG GGACCTGGGC GGGCATCGGA CAGGCGGTCT TCGTCTTCAT CGTCGCCACC
TTTGCCATGC TTTTGTTCGC GGCGGCAACG CAGGGCTATT TCCTCGCGAA ATCCCGCATC
TATGAAAGTG CCGCCCTGCT GCTGGTGGCC TTCACGCTCT TCGTGCCGAA CGTGTTCCTC
AACATGGTCC AGGACCCGTT CCGCTCCGTC GCCCCGACAG AGTTTGAGAC GGTGCTGGCC
GAAGTGCCGG AGGGGGAGCA ATTGCGCCTT CTGATCGCCG GGCCGGACTT TGCCAGCGGC
GAGACGGCGG AAACCACGCT GGTGGTCACG GCGGAGGGGG CGTCTGCGGC AGAACGCGTG
GCCAATTCCG GCCTGCTCTT GCTGCCCGAG GGCGAGACGA TGCGGCTGGA CGAGCCGATG
TTCGGCACCG ATGCCTCCGA CGCGTTGATC GACTTCGACT TCTATGCCGA CGACAATCCG
GTGCAGCTCT CGGCCATTCA GGTCGCCCAG GATCGCTGGC CCGAGCAGAT CTTCTACATC
CCCGCATTGC TGCTTCTGGG CATCGTGATC CTGCTGCAAC GGCGCAGGCA AACCAAACCG
GCCTTCTAG
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| Protein sequence | MSDQGQDQTG GKRQFSDEEL QDLVASTDSG ARNPSNRYVA LLIAGIALVW SLFQLWIAQP
QLWFAEYISA MNSTQTRPLH LFFAIVLAFL AYPAFKNSPR NYVPWYDWVL LAVGAFTTFY
VFWASDELAM TARSGLPTQF QVILGAVGIV LLLEASRRAL GPALTIVGSL FLLYAYFGQG
ALIPDLISHE GLSFTSLINA QWLDTGGVFG IPLGVSTAFV FLFVLFGSLL DKAGAGNYFI
KLAFAGLGHL RGGPAKAAVV GSAMTGLISG SSIANVVTTG TFTIPLMKRV GFTAEQAGSV
EVASSVNGQI MPPVMGAAAF LMVEFIGISY VEVIKHAFIP AVISYIALVY IVHLEALKKD
MPALGQAKSF SGMLIKFFLG FVVAGIGFTA LIYAVGFLRD TVPGGTGPIM MALLAAVYVW
LVAIASRKPD LEVDDPNSEE IKLPEVKDIY ATGLHYVLPI VVLVWFLMVE RQSPARSAFF
ATSLMIGIIV TQRPLKALFR GEAARIASEF KAGLVDLREG LIAGARNMIG IGVATAAAGI
IVATVTRTPI GTELAGLVEL LSGGNLFLML CLVGLFSLIL GMGLPTTANY IVVSSLMAGV
VVSLGAQEGL IVPLIAAHLF VFYFGIMADV TPPVGLASFA AAAVSGGDPI KTGFTAFFYS
FRTVALPFLF IFNPTLILYG VDLGTWAGIG QAVFVFIVAT FAMLLFAAAT QGYFLAKSRI
YESAALLLVA FTLFVPNVFL NMVQDPFRSV APTEFETVLA EVPEGEQLRL LIAGPDFASG
ETAETTLVVT AEGASAAERV ANSGLLLLPE GETMRLDEPM FGTDASDALI DFDFYADDNP
VQLSAIQVAQ DRWPEQIFYI PALLLLGIVI LLQRRRQTKP AF
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