| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2269 |
|---|
| Symbol | |
|---|
| ID | 3934724 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 2276251 |
|---|
| End bp | 2277015 |
|---|
| Gene Length | 765 bp |
|---|
| Protein Length | 254 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637904626 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_510211 |
|---|
| Protein GI | 89054760 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.902222 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAATCGA TTGAGGGATA TTCGGTCCTG ATCACCGGTG GCGGCTCGGG CCTCGGGCGC
GGCGTGGCCG AAGATATGGC CGCTCGTGGC GCGAAAGTAA CGATCACCGG GCGGCGGGCT
GAGAAACTGG AAGACGTAGC GGGCGCCATC GGGCCGAGCT GCGCCATCGC TGCGGGCGAC
GTGTCCATCG AAGAAGACCG CCGACGCATG ATCGACACAG CCGTCGCCCA CGGCGGCGGC
CTTCAGGGGC TGTTCAACAA TGCGGGCAAC ATGCTGCGCG GGCCGATCAC AGACCTGGCG
GCCGAAGACA TCCTCGAGGT GATGAACGTC AACGTCGTGG CAGGAATGCG ACTGACAGGT
CTTGCTGCAC CACATCTGGA GGAACACGGC GGCGCAGTGG TGTTTGTCGG CTCTGGCCAC
ACCCGCCGCG CTTTTCCCGG TGCATCACCC TACGCGGCCT CCAAGGGCGC GGTAGAAGTT
CTCGCGCAGG TTCTCGCGGC AGAGCTTGGC CCCAAAGGTA TCCGCGTCAA TTGCATCGTT
CCGGGGGCGG TGCCGACCGA GATCAACGTG CGCGCCGGGA TCGCCGCAAG CTTCGAGGAC
AACAAAGTGC GCCTCAACTC CATGGTTGAC GACCACCCCC TGGGCCGCAT CGGCACCCCG
CAGGAAATCG CCGAAGCCGT AGACCACCTG CTGCGTGCAG AATGGACAAC GGGCGCCTCT
TTGGTCGTCG ACGGCGGCCT CGGTCTAGGC GTCAGCTACA AGTGA
|
|---|
| Protein sequence | MQSIEGYSVL ITGGGSGLGR GVAEDMAARG AKVTITGRRA EKLEDVAGAI GPSCAIAAGD
VSIEEDRRRM IDTAVAHGGG LQGLFNNAGN MLRGPITDLA AEDILEVMNV NVVAGMRLTG
LAAPHLEEHG GAVVFVGSGH TRRAFPGASP YAASKGAVEV LAQVLAAELG PKGIRVNCIV
PGAVPTEINV RAGIAASFED NKVRLNSMVD DHPLGRIGTP QEIAEAVDHL LRAEWTTGAS
LVVDGGLGLG VSYK
|
|---|
| |