| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2223 |
|---|
| Symbol | |
|---|
| ID | 3934677 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 2228397 |
|---|
| End bp | 2229956 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637904580 |
|---|
| Product | trimethylamine methyltransferase |
|---|
| Protein accession | YP_510165 |
|---|
| Protein GI | 89054714 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG5598] Trimethylamine:corrinoid methyltransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0727835 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGACG CGGAACAGAC GCAAACAATG GGACGGCGAC GGGCGCGGGG CGGGGGCGGT
GCGGCACGAC GGGCGTCCCG GTCCGCGGTC AGTTTTGAGA CAGCAAAGTT CATTGAGCGG
AAGATCCCGA ACCTCGAAAT CCTGAACGAA GAAGCCTTGC AGATCATCGA GGCCAATGCC
GAAACGGTGC TGGAAGAGAT CGGCGTCATG TTCGTCGAAA ACCCCGCCGC GCTGGATCGT
TGGCGCGAGG CGGGGGCCGA TGTGCGCGGT GAGCGCGTGC ATATCCCAAA GGGCCTGACG
CATGATCTGA TCAAAACGGC ACCGTCGAAA TTCACCCAGA TCGCCCGCAA CCGGGACCGT
GATGTGGAGA TCGGCGGCAA CAATCTGGTG CTCGCGCCCG TCTATGGCCC GCCTTTCGTG
CACGATCACG CGGGCGGTCG CCGCTATGCG ACCATGGCGG ATTTCGAGAA GTTCGTGAAA
CTTGGCTACA TGTCGAAATG GCTGCACCAT TCCGGTGGCA CAGTGTGTGA GCCCACGGAC
GTGCCGGTGA ACAAGCGCCA CCTCGATATG CTCTATGCGC ACATGTCGCT GTCGGACAAA
CCCTTCATGG GCTCGGTGAC AGAACCCTCC CGCGCGCTCG ATTCGATTGA AATGGCGAAG
ATCCTGTTCG GGGCGGATGT GGTCGAGGCC AATACGGTCA TGACCTCTCT GATCAACATC
AACTCTCCGC TGACCTTTGA CGGCGTGATG ATGGGCGCGT TGGAGCATTA TGCGGCGGCG
GGTCAGGCCT CCATCATCTC TCCGTTCATC GTAGGGGGCG CGATGGCGCC GGTGTCCGTG
GCCGGAACGC TCACCCAATG TCTGGCGGAA GGGCTGGCGG GGGTTGCTTA CGCGCAGCTT
GTGCGCGCGG GATCGCCGGT GATCATGGGG GCGATGGTGA CATCCATCGA CATGAACTCG
GGCGCGCCAA CGTTTGGCAC GCCGGAAGCG TCGCAGATCA CATACGGTAT GGGGCAATTG
ACCCGGCGGC TGGGGCTGCC CTACCGCTCG GCAGGCTCGT TCAACGGATC GAAAATCCCC
GACGCGCAGG CGGGATACGA GACGGCGAAT TCGCTCAACA TGGGGTTGTT GTCCGGCGTG
AACTTCATGC TGCACTCCTG TGGCTGGCTG GAAGGCGGAC TGGCCGCCTC GCCCGAGAAG
TTCGTGATCG ATGCCGACCA GTTGGGGATC CTTCACAAGC TGGCCGACGG CGTGTCGATC
GACGAGAACG CCCAGGCGAT GGACGCCCTG CGCGAGGTTG GCCCCGGCGG ACACTTCCTG
GGATGCGCCC ATACGCAGGC CAATTACCAG ACGGCGTTCT GGCGTTCGAA CGTGCTGGAC
TATAAGCCGT ACGAGACCTG GGCGGAGGAG GGCAGCCGCT CCAGCTACGA GCTGGCGGCG
GCCAAGGTCG ATCAGTTGCT GTCCGACTAC CAACAACCCC ACCTTGACCC GGTCACGGAC
GAGGCCTTGC GCGCCTATAT CGCCGAGAAG AAGGCGTCGA TGCCGGACGC CTTCATTTGA
|
|---|
| Protein sequence | MGDAEQTQTM GRRRARGGGG AARRASRSAV SFETAKFIER KIPNLEILNE EALQIIEANA
ETVLEEIGVM FVENPAALDR WREAGADVRG ERVHIPKGLT HDLIKTAPSK FTQIARNRDR
DVEIGGNNLV LAPVYGPPFV HDHAGGRRYA TMADFEKFVK LGYMSKWLHH SGGTVCEPTD
VPVNKRHLDM LYAHMSLSDK PFMGSVTEPS RALDSIEMAK ILFGADVVEA NTVMTSLINI
NSPLTFDGVM MGALEHYAAA GQASIISPFI VGGAMAPVSV AGTLTQCLAE GLAGVAYAQL
VRAGSPVIMG AMVTSIDMNS GAPTFGTPEA SQITYGMGQL TRRLGLPYRS AGSFNGSKIP
DAQAGYETAN SLNMGLLSGV NFMLHSCGWL EGGLAASPEK FVIDADQLGI LHKLADGVSI
DENAQAMDAL REVGPGGHFL GCAHTQANYQ TAFWRSNVLD YKPYETWAEE GSRSSYELAA
AKVDQLLSDY QQPHLDPVTD EALRAYIAEK KASMPDAFI
|
|---|
| |