| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2152 |
|---|
| Symbol | |
|---|
| ID | 3934606 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 2160030 |
|---|
| End bp | 2162018 |
|---|
| Gene Length | 1989 bp |
|---|
| Protein Length | 662 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637904509 |
|---|
| Product | cytochrome c-type biogenesis protein CcmF |
|---|
| Protein accession | YP_510094 |
|---|
| Protein GI | 89054643 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1138] Cytochrome c biogenesis factor |
|---|
| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAGTAG AACTTGGACA TTTCGCCCTG ATCCTCGCCT TCGCGGTGGC GATCTTCCAG
ATGATCGTGC CCATGGTCGG GGCCGCGCGG GGCAACAGCG CGTGGATGGC CACGGCGGAA
CCGGCCGCCA GCGCGCAATT CATCCTGACG GGCTTCGCCT TCGCGGCGCT CACCTACGCC
TTTGTCACGT CTGACTTTTC GCTCAGCCTT GTGGTCGCGA ATTCCCACAC CGCCAAGCCG
ATGCTCTACA AAATCTCCGG CGTTTGGGGC AATCATGAAG GGTCATTGCT GCTCTGGGTC
GTGATCCTGA CGTTGTTCGG GGCCTGTGCC GCATGGTTTG GGAAGGGTCT GCCGCCAACG
CTACGTGCGC GCGTGCTGGC TGTGCAATCC TCTGTTGCCG TGGCCTTTTT CGCGTTCATC
CTGTTCACGT CCAACCCGTT TCTGCGCCTC GCCTCGCCGC CCTTTGACGG CCAGGACCTG
AACCCGCTCC TGCAAGACCC GGGTCTCGCG TTTCACCCGC CATTTCTCTA CCTGGGCTAT
GTGGGCCTCT CCATGGCCTT CTCCTTCGCC GTCGCCGCCC TGATTGAGGG GCGCGTGGAT
GCGGCCTGGG GCCGTTGGGT CCGGCCCTGG ACCTTGGCGG CGTGGGTGTT CCTGACCATC
GGCATCGGCC TCGGCTCCTG GTGGGCCTAT TATGAGCTTG GCTGGGGCGG CTTCTGGTTC
TGGGACCCGG TGGAAAACGC GTCCTTCATG CCGTGGCTGA TCTCGGCGGC CCTGCTCCAT
TCCGCCATCG TGGTCGAGAA ACGTGAAAGC CTGAAAAGCT GGACCATCCT GCTGGCGATC
CTGGCGTTCG GCTTCTCGCT GATCGGCACA TTCATTGTCC GCTCCGGCGT GCTGACGTCG
GTCCATGCCT TCGCCAATGA CCCCGAGCGC GGGGTGTTCA TTCTCCTGAT CCTCGCCATC
TTCATGGGCG GGGCGCTGGT CCTGTTTGCC TTCCGCGCAG GCGCGATGGA GGCCAAGGGC
GTCTTCTCCA CCGTCAGTCG TGAGAGCGGC CTTGTGGTCA ACAACCTGCT TCTGGCCGTG
TCCTGTTTCG TGGTCTTCAT CGGAACCATC TGGCCGCTGA TCGCAGAGCT GTTCTTTGAC
CGGACGCTCT CCGTTGGCCC GCCATTCTTC GATGCGGCGT TTACGCCCTT CGTCTTCGCT
CTCGCCGTCG TCTTGCCCGT GGCCGCGATG ATGCCGTGGA AGCGGGCGAA ACTGGACAAA
CCCCTGAAGG CGTTGATGCC TGCTGCCGTC CTTGGGCTCG CTGTCGGGCT GCTCGCCTGG
GCGATGTATA CGGGCCGGAC AGCCATCGCG CCGCTTGGTG TTGGTCTGGC CGTCTGGCTG
GTGGCGGGGG CCGCGACGGA TCTGTGGTCA CGCACCGGGC GCGGGCCCAT CGGAGGTCGT
CTTGGGCGGC TCACGCGTCT GCCGCGTGCG GATTGGGGCA AGTCGATTGC CCATGCCGGT
GTGGGCGTCA CGATGTTCGG CGTGGTGACG CTGACCGGCT ACCAGATCGA GGATATCCGC
GTCGCGCGAG AGGGCGAGGC CTACCAGGTC GGCGCTTATG AGGTGGAGCT TCTGGGCGTG
GCCGAGAATG TGCGCGGTCC CAATTACATC AGCACGATCG CATCCGTTGC GGTCCGCGAT
CCGGAGACGG GGGCCGAGAT CGCGACCCTA TCGCCAGAGC GGCGGATCTA TCCCGTCGCA
GGCATGCCGA CGACGGAGGC TGGGATCAAT AATGGCGTGA CACGGGACGT CTACATCACG
CTCGGCGATC CCCAGCAGGG TGGGGGATGG GCGCTTCGCA TCTGGATCAA ACCCTTCGCC
AATTGGGTCT GGGGCGGGAC AATCATCATG GCCCTTGGCG GGTTTCTAAG CCTGTCGGAC
CGGCGCTACC GGATGGCGGC GGGGGCGGCG AAACAACGGT CTTCGACCTC GGAGGTTCCT
GCGGAATGA
|
|---|
| Protein sequence | MIVELGHFAL ILAFAVAIFQ MIVPMVGAAR GNSAWMATAE PAASAQFILT GFAFAALTYA
FVTSDFSLSL VVANSHTAKP MLYKISGVWG NHEGSLLLWV VILTLFGACA AWFGKGLPPT
LRARVLAVQS SVAVAFFAFI LFTSNPFLRL ASPPFDGQDL NPLLQDPGLA FHPPFLYLGY
VGLSMAFSFA VAALIEGRVD AAWGRWVRPW TLAAWVFLTI GIGLGSWWAY YELGWGGFWF
WDPVENASFM PWLISAALLH SAIVVEKRES LKSWTILLAI LAFGFSLIGT FIVRSGVLTS
VHAFANDPER GVFILLILAI FMGGALVLFA FRAGAMEAKG VFSTVSRESG LVVNNLLLAV
SCFVVFIGTI WPLIAELFFD RTLSVGPPFF DAAFTPFVFA LAVVLPVAAM MPWKRAKLDK
PLKALMPAAV LGLAVGLLAW AMYTGRTAIA PLGVGLAVWL VAGAATDLWS RTGRGPIGGR
LGRLTRLPRA DWGKSIAHAG VGVTMFGVVT LTGYQIEDIR VAREGEAYQV GAYEVELLGV
AENVRGPNYI STIASVAVRD PETGAEIATL SPERRIYPVA GMPTTEAGIN NGVTRDVYIT
LGDPQQGGGW ALRIWIKPFA NWVWGGTIIM ALGGFLSLSD RRYRMAAGAA KQRSSTSEVP
AE
|
|---|
| |