| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2106 |
|---|
| Symbol | |
|---|
| ID | 3934559 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 2114996 |
|---|
| End bp | 2115730 |
|---|
| Gene Length | 735 bp |
|---|
| Protein Length | 244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637904462 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_510048 |
|---|
| Protein GI | 89054597 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.248002 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.662433 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGACTTC AGGGAAAACG GGCCGTTGTG ACCGCCGCGG GGGCCGGTAT CGGGCAGGCC
ACGGCCATCG CTTTTGCCGC TGAGGGGGCG GAGGTCATAG CCACCGACAT CAACCCCGAC
GCGCTTGGCC CGGTGAAGGA TGCAGGATGC AGCGTGCAGC CGTTGGACGT GACCGATGGC
GATGCCATCG CGGACTTCAC CGCACAGATC GGCGCGCCGG ATATCCTGTT CAACTGCGCG
GGCTTTGTGC ATCACGGCAC CATTCTGGAC TGTGACGACG ACGCCTTTGA TTTCAGCTTC
AATCTGAACG TCCGGGCGAT GTTCCGCATG ACACGCGCGT TCCTGCCAGG GATGATCGAC
AATGGCGGCG CCAGTATCGT CAACATGGCC TCGGTCGTGT CGTCGATCAT CGCCGCGCCC
AATCGGTTCG TCTATGGCGG GACCAAGGCC GCGGTGATTG GCATGACCAA AGGCATTGCG
GCGGATTTCG TGACACAGGG CATCCGCTGC AACGCGATCT GCCCCGGGAC CGTCGACAGC
CCCAGCCTGC AGGGTCGGAT GCGCGCACAG GGGGATTACG GCACCGCCCG CGCCGCCTTT
GTCGCCCGTC AACCCATGGG TCGGATTGCG GGCGCAGAGG AAGTCGCCAA ACTGGCTGTC
TATCTGGCCA GCGATGACAG CGCCTTTGTG ACCGGTCAGG CCATGGTGGT CGATGGCGGA
TGGTCGAACG TTTGA
|
|---|
| Protein sequence | MRLQGKRAVV TAAGAGIGQA TAIAFAAEGA EVIATDINPD ALGPVKDAGC SVQPLDVTDG
DAIADFTAQI GAPDILFNCA GFVHHGTILD CDDDAFDFSF NLNVRAMFRM TRAFLPGMID
NGGASIVNMA SVVSSIIAAP NRFVYGGTKA AVIGMTKGIA ADFVTQGIRC NAICPGTVDS
PSLQGRMRAQ GDYGTARAAF VARQPMGRIA GAEEVAKLAV YLASDDSAFV TGQAMVVDGG
WSNV
|
|---|
| |