Gene Jann_2101 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_2101 
Symbol 
ID3934554 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand
Start bp2110407 
End bp2111078 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content63% 
IMG OID637904457 
Productmajor intrinsic protein 
Protein accessionYP_510043 
Protein GI89054592 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0580] Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.71404 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.417665 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCTCG ATCGCCGCCT GATGGCTGAA TGGCTTGGCA CCTTTTCGCT TCTGGCCACG 
GTCATCGGCT CAGGCATCAT GGCAGACCGG CTGGCCGACG GGAACGTGGC CATCGCCCTT
TTGGGCAACA CGATCCCGAC CGGCGCGATC CTTGTTGTGT TGATCACCGT CTTCGGCCCG
ATCTCCGGCG CGCATTTCAA CCCGGCCGTA ACGCTGTCCT TCGCGCTGCG ACGCGAGATC
ACGCCGGGGG ATGCCGGGCT TTATGTCGCC GTGCAGGTCT TTGGCGGCAT CGTGGGTGTT
TTGGCGGCCC ATGTGATGTT TGAACACCCA TTGCTCGACC CCTCGACCAC CGCCCGCACG
GGGCTAGGCC AATGGGCTGC AGAATTCGTG GCAACCTTCG GCCTTGTTGG CACCATCCTC
GCTTGCCTGA AGGCGCGACC ACAGGCGGTG CCGATGGCGG TCGGGCTCTA TATTACGGCG
GCCTATTGGT TCACATCGTC GACTTCCTTC GCGAACCCCG CCGTCACCAT CGCGCGCGGG
TTCTCGGACA CATTTGCCGG GATCGCGCCC GCAGATGTCG CGGCGTTTAT TGCCGTGCAA
CTGGTCGCGG CTGTCCTCGC GACCTGGTTT TTCGGCTGGT TGCTAAATGA AACAGAGGAG
GACGTCGCAT GA
 
Protein sequence
MTLDRRLMAE WLGTFSLLAT VIGSGIMADR LADGNVAIAL LGNTIPTGAI LVVLITVFGP 
ISGAHFNPAV TLSFALRREI TPGDAGLYVA VQVFGGIVGV LAAHVMFEHP LLDPSTTART
GLGQWAAEFV ATFGLVGTIL ACLKARPQAV PMAVGLYITA AYWFTSSTSF ANPAVTIARG
FSDTFAGIAP ADVAAFIAVQ LVAAVLATWF FGWLLNETEE DVA