| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2076 |
|---|
| Symbol | |
|---|
| ID | 3934529 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 2084364 |
|---|
| End bp | 2085245 |
|---|
| Gene Length | 882 bp |
|---|
| Protein Length | 293 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637904432 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_510018 |
|---|
| Protein GI | 89054567 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1175] ABC-type sugar transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0202673 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.352702 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAACGCG CCGCATTCGG GCATATCGGA TTTCCGCTTC TGTTGCTGAT CCCGCAACTC
GCCATCATCG CGATCTTCTT CTATTGGCCG GCCGGCTACG CGATCCAATC CTCCTTCTAT
CTGGAAGATC CCTTTGGCTT CGGCTCCACC TTTGTGGGGA TGGAAAACTA CACGCGGCTG
ACGCGCTCCT CCAGCTACAT GTCGAGCGCC TGGTTCACCC TGATCTTCAC CGCACTGGTC
ACATTTTTCG CGCTGGCCAT AGCGCTTCTG CTGGCGGTCA AGGCCGATAA GGTGATCCGG
GGCGCCAAGA CCTATCGCAC GCTGCTGATG TGGGTCTATG CCATCGCGCC GCCCGTCGCG
GGCCTGATCG GGGTCATGCT GTTTGACCAG TCGCGCGGCA ACCTCACACA GCTATTCGCC
ATGATGGGCT TCGATTTCCG CCTTGGCGTG AACTACTGGG ATACGGCCAG CGCGATGATC
ACCGTGTCGA TCTGGAAACA GATCCCCGTC AACTTCATCT TCTTCCTCTC GGGCTTGCAG
GCGATCCCAC GCTCGGTCCG CGAAGCCGCG ATGATCGACA ACAACTCCGG CACAAGGCGG
TTCTGGGACA TCACCTTCCC GCTACTCGCC CCCACCGGTT TCTTCCTGCT GATCATCAAC
ATCACCTATT CGCTGTTCGA GACCTTCGGC ATCATCGACA CGCTGGTCAA AGGGGAGCCG
GGCAACAACC CGATGACGCT GGTCTACCGC GTCTTCGTGG ATGGCTTCCG GGGCCAGGAT
CTGGGCGGAT CCTCGGCGCA ATCGGTGGTC CTGATGGTCC TCGTCCTGAT CCTCACAATC
GTGCAGTTCC GCTTCCTGGA ACGCCGCATT CACTACACAT AG
|
|---|
| Protein sequence | MKRAAFGHIG FPLLLLIPQL AIIAIFFYWP AGYAIQSSFY LEDPFGFGST FVGMENYTRL
TRSSSYMSSA WFTLIFTALV TFFALAIALL LAVKADKVIR GAKTYRTLLM WVYAIAPPVA
GLIGVMLFDQ SRGNLTQLFA MMGFDFRLGV NYWDTASAMI TVSIWKQIPV NFIFFLSGLQ
AIPRSVREAA MIDNNSGTRR FWDITFPLLA PTGFFLLIIN ITYSLFETFG IIDTLVKGEP
GNNPMTLVYR VFVDGFRGQD LGGSSAQSVV LMVLVLILTI VQFRFLERRI HYT
|
|---|
| |