| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2053 |
|---|
| Symbol | |
|---|
| ID | 3934506 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 2057403 |
|---|
| End bp | 2059142 |
|---|
| Gene Length | 1740 bp |
|---|
| Protein Length | 579 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637904409 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_509995 |
|---|
| Protein GI | 89054544 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0131056 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.653692 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAGA CAACTCAGCT GCTTTTGGGT ACGGTCGCGA TGACGCTGGC CCTGACCGGC
GGCGCGGTGG CGCAGGATGT GGCGCGCGAG GATACGGTGA TCTTCGATCT CGACCGCACG
ATCCGGGACC CTGAAAACTT CAACTGGATG ACCGACGGCA CCGGCATTCG CCGCATGCAC
GGTGCGCATC AGGCAGTGTG GGAGCCTCTG TTCATCCTCA ACTATAACAC CGGTGAGCTG
GACCCGTGGC TTGCGACCGG CTTTGATGCC AACGACGACA GCACCGAGTT CACCATCACC
CTGCGCGAGG GCGTGGAATG GTCGGATGGA GAGGTATTCA ACGCCGAAGA TGTCGTCTTC
ACCGTGGAGA TGGCGCTTGG CAACGAAGAG TTGAACGCAC GCGAAGTCGC AACCCTGCGG
GGGCAGGTGG CCTCTGTCGC GATGGTGGAT GACCTGACCG TCACCTTCAC GCTCAACGCG
CCGAACCCGC GCTTCGTGTT GGAAAACTTC GGCGTGCGCA CGTTCGGCTC GTTCCTGATC
ATGCCGGAGC ATATCTGGTC GGCGGCAGAA AACCCCGCAA CCTTCACGTT CAACCCGCCC
GTGGGCACCG GACCCTATAC CTTCACGTCC GCCGCCACGA ACCGCGCGAT CTGGGACCGC
GACGATGACT GGTGGGGCGT TGACGCGGGC TTCATGGATC TGCCAGAGCC GCTGCGCGTT
GTGTTCCTGG AATCGGGCGG CGAAGAAAGC CGCGCACAAT TGCTGGCTAC AAATGGGTTG
GACGCAGCGC AGAACATGTC CGTCGGCACG TTCGAGGCGG TGGGCTTCCA GAACGAAAAC
GTCATGGCGT GGTACGCGGA TTATCCTTTC GCCGTGGCTG ATCCCTGCGC GCGGCAGTTG
GAGATCAACA CCACGGTCGC ACCCTGGGAT AACGCCAACA TGCGCCGGGC GGTGAACCTG
ATCATTGATC GGGAGCAGAT CGTGAACATC GCCGCTGAAG GTGCGACGAC GGCCTCTACG
ACGATGTTCG CGCAGTTCGG CTCCATGTCG CCGTTCATTG ATGCGGTGGT AGAGGCCGGT
CATGGCCTCT CTGCCTCCGC CGATGTGGAG GCCGCGCAGG CTTTGCTGGA AGGCGAAGGC
TGGATGCGTG ACGGCGATTA CTACGCCAGG GATGGTGAGA CGCTGAGCGT GTCGATCCAC
GTCAACTCCG CCTCTACTGA ATACACACGC ACCATTGACG TGATCGTGGA GCAGTTGCAG
CGGGCAGGGA TCGACGCGCG GTCGGTCCCG GTTGAAAACT CCGTCTTCTG GGGTGAAGTG
CTGCCCTTTG GCGGGTTCGA GATGTCCTAC AGCTGGCTGT CATGCGGCTC GGTCAATGAG
CCATGGGCCT CCATGGGGCG CTACACGACG GCAGATGTGG TGCCGGTGGG CGAACGCTCC
CCCGGCTTCA ACAACACGCC CCGTTGGGAT ACGGCGGCCG CCGAAAGCTA CACCGCGATC
GTGAACGACA TGGCCGCACT GCCCCTGGGC GATCCTGCGG TGCCGGGCAT GGTGGCGGAG
GCATACCAGT ATCTGGACGC CGAAATGCCA TTCATCCCAC TGGTGCAGGC CTACAAGCTG
ATGCCCTTCA GCACGACCTA TTGGGAGGGC TGGCCGTCTG CGGACAATTA CTACAACCAC
CCGTTCTTCC ACTGGAATTC GGGCCATCAG ATCATCCACA ACCTGACGCG CGTGGAATGA
|
|---|
| Protein sequence | MKKTTQLLLG TVAMTLALTG GAVAQDVARE DTVIFDLDRT IRDPENFNWM TDGTGIRRMH
GAHQAVWEPL FILNYNTGEL DPWLATGFDA NDDSTEFTIT LREGVEWSDG EVFNAEDVVF
TVEMALGNEE LNAREVATLR GQVASVAMVD DLTVTFTLNA PNPRFVLENF GVRTFGSFLI
MPEHIWSAAE NPATFTFNPP VGTGPYTFTS AATNRAIWDR DDDWWGVDAG FMDLPEPLRV
VFLESGGEES RAQLLATNGL DAAQNMSVGT FEAVGFQNEN VMAWYADYPF AVADPCARQL
EINTTVAPWD NANMRRAVNL IIDREQIVNI AAEGATTAST TMFAQFGSMS PFIDAVVEAG
HGLSASADVE AAQALLEGEG WMRDGDYYAR DGETLSVSIH VNSASTEYTR TIDVIVEQLQ
RAGIDARSVP VENSVFWGEV LPFGGFEMSY SWLSCGSVNE PWASMGRYTT ADVVPVGERS
PGFNNTPRWD TAAAESYTAI VNDMAALPLG DPAVPGMVAE AYQYLDAEMP FIPLVQAYKL
MPFSTTYWEG WPSADNYYNH PFFHWNSGHQ IIHNLTRVE
|
|---|
| |