| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_2045 |
|---|
| Symbol | |
|---|
| ID | 3934498 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 2049181 |
|---|
| End bp | 2050236 |
|---|
| Gene Length | 1056 bp |
|---|
| Protein Length | 351 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637904401 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_509987 |
|---|
| Protein GI | 89054536 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.100967 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTCC AAGACATCAG ACCCACCATG ATCAGCAGCA CAGCCCTTGG GCTCTTGCGG
TTTGTGATCG TCGTGGCCCT GACGTTTCTG GGCCTTCTGG CGCTGACATT TTTCATCGGG
CGCGTGGTGC CGATTGACCC GGTCCTGGCC GTGGTGGGCG ACCGTGCCAC GCCGGAGCAG
TACGAGGTCG CGCGCGTTGC CATGGGCCTG GACCGTCCGC TTGTCGTTCA ATTCATCAGC
TACGTGGGCG ACGTGCTGCG CTTTGATCTG GGCCTGTCGA CCTCCACCAA CCGGCCCGTG
GCCGAAGACC TCGCGCGGGT GTTTCCGGCC ACGTTGGAGA TGGCAACGCT TGGCATCCTC
ATCGGCGTGG GCCTTGGTGT GCCTGCCGGC GTTCTGGCCG CCGCATGGCA GGGCAGCTGG
GTGGATCAGA TCATTCGCGT CTTCGCCCTT ATGGGCTATT CGGTGCCTGC CTTCTGGCTC
GGCCTCGTGG GCCTCGCCGT CTTCTACGCT TGGCTCGGCT GGGTGGAGGG GCCGGGCCGC
GTCAGCATCT TCTACGACGG GATCACACCT GTGGTGACGG GCCTTTTGAC CGTGGATGCG
CTGCTTGATG GCGACTGGAC CGTCTTCAGA AGCGCGTGGT CGCATATCAT CCTGCCCGCT
GCGATCCTTG GGGTCTTCTC CTTGGCCTAT ATCGCGCGAA TGACGCGGTC TTTCATGCTG
GATCAACTCA GCCAGGAATA CATCACCACC GCGCGCGTCA AAGGTGTGGC GGAGTGGCGG
GTGATCTGGG TCCATGCGTT CGGCTCCATC CGGGTGCCGC TGATCACCGT CATCGGGCTA
TCCTATGCGG GCCTGCTGGA AGGGTCCGTG ATGATCGAGA CGGTCTTCTC GTGGCCCGGC
ATCGGCAACT ATCTGACAAC CGCCTTGTTC AACGCCGATA TGAACGCGGT CCTCGGCGCG
ACGCTGGTCA TTGGCGCGGT GTTCATCCTG ATCAACAAAG TGTCTGACCT GCTTTACCGC
ATTCTCGACC CCCGCTCACG CGATGGGAGC CGCTGA
|
|---|
| Protein sequence | MTFQDIRPTM ISSTALGLLR FVIVVALTFL GLLALTFFIG RVVPIDPVLA VVGDRATPEQ
YEVARVAMGL DRPLVVQFIS YVGDVLRFDL GLSTSTNRPV AEDLARVFPA TLEMATLGIL
IGVGLGVPAG VLAAAWQGSW VDQIIRVFAL MGYSVPAFWL GLVGLAVFYA WLGWVEGPGR
VSIFYDGITP VVTGLLTVDA LLDGDWTVFR SAWSHIILPA AILGVFSLAY IARMTRSFML
DQLSQEYITT ARVKGVAEWR VIWVHAFGSI RVPLITVIGL SYAGLLEGSV MIETVFSWPG
IGNYLTTALF NADMNAVLGA TLVIGAVFIL INKVSDLLYR ILDPRSRDGS R
|
|---|
| |