| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1959 |
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| Symbol | |
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| ID | 3934410 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 1952908 |
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| End bp | 1954530 |
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| Gene Length | 1623 bp |
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| Protein Length | 540 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637904313 |
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| Product | putative alpha-isopropylmalate/homocitrate synthase family transferase |
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| Protein accession | YP_509901 |
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| Protein GI | 89054450 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
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| TIGRFAM ID | [TIGR00977] 2-isopropylmalate synthase/homocitrate synthase family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00276061 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.544907 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAAAT CCCGCCTCTA TCTTTACGAC ACCACCCTGC GCGACGGGCA GCAGACCCAG
GGCGTCCAGT TTTCCACGCC CGAGAAGGTC CGCATCGCCG AGGCGCTCGA CGCCCTCGGC
CTCGACTATA TCGAAGGCGG CTGGCCCGGC GCGAACCCCA CCGACAGCGC GTTTTTCGAC
GATGCCCCCA GGACCCGCGC CCGGATGACG GCCTTCGGGA TGACCAAGCG GGCCGGGCGC
TCGGCTGAGA ATGACGACGT TCTGGCCGCC GTCCTGAATG CAGGCACAGG GACCGTCTGC
CTTGTCGGCA AGTCCCATGA TTTTCACGTG ACCGAAGCGC TTGGCATCAC CTTGGCGGAG
AATGTCGAGA ATATCCGCGC CTCCATCGCC CACCTCGTCG CCCAGGGCCG CGAGGCGATC
TTTGACGCGG AGCATTTCTT TGACGGCCAC AAGGCCAACC CGGACTATGC GCTGGAATGC
ATCCATGCCG CCTACAGCGC AGGCGCGCGG TGGGTGGTGC TGTGTGACAC CAACGGCGGG
ACGTTGCCTG ACGAGATTGC CGGGATCACC CACGCCGTCA TCGCCTCAGG TCTCCCCGGG
GAATGTCTGG GCATCCATAC GCATAACGAT ACCGAAACCG CCGTGGCGGG CAGCCTCGCG
GCGGTGCAGG CGGGCGCGCG TCAGATCCAG GGCACGTTGA ATGGTTTGGG GGAGCGCTGC
GGCAACGCCA ATCTGACCAC GCTGATCCCG ACCCTTTTGC TGAAAGAGCC GTACCGGTCG
TCCTATGACA CCGGGATCGC GGTGGAGACG TTGGATGGCC TGACGCGACT GAGCCGGATG
CTGGACGATA TCCTCAACCG GGTGCCGCAC CGACAAGCGC CCTATGTGGG GGCCTCGGCC
TTCGCCCATA AAGCGGGCCT CCACGCCAGC GCCATCGTCA AGAACCCCAC GACCTACGAG
CATATCGCGC CCGAAATCGT CGGCAATGAC CGCATCATCC CGATGTCCAA TCAGGCGGGC
CAGTCGAACC TGCGCAAGCG TCTGGCGGAG GCGGGGTTGG AGGTCGAAAG GGACAACCCG
GCGCTGCCTG CGATCCTCGA TGCGATCAAG GACCGGGAGG CGGACGGGTA CAGCTTTGAC
ACGGCCCAGG CCTCCTTCGA GTTGCTGGCG CGGCGCGCGT TGGGGATGTT GCCCGCGTTC
TTTGAGGTCA AGCGCTACCG CGTCACGGTG GAGCGGCGGA AGAACAAGTA CAATCAGATG
GTGAGCCTTT CGGAGGCGAT GGTCGTCCTG AAAGTGGGCG GCGAAAAGAA GCTGTCGGTC
AGCGAAAGCA TGGACGAGAC GGGCAGCGAC CGGGGGCCGG TGAACGCATT GTCGAAGGCT
CTGGCGAAGG ATCTGGGGCC GTATCAGGAA TTCATCAAGG ATATCCGCCT TGTGGACTTC
AAGGTCCGCA TCACCCAAGG CGGCACAGAG GCCGTCACCC GCGTGATCAT CGACAGCGAG
GACAGTCAGG GGCGGCGCTG GTCGACCGTG GGCGTATCCC CCAACATCGT GGATGCGAGT
TTCGAGGCGC TGCTGGACGC GGTGAACTGG AAACTGATCC ACGAAGGCGC AGCGGTCCTA
TGA
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| Protein sequence | MTKSRLYLYD TTLRDGQQTQ GVQFSTPEKV RIAEALDALG LDYIEGGWPG ANPTDSAFFD
DAPRTRARMT AFGMTKRAGR SAENDDVLAA VLNAGTGTVC LVGKSHDFHV TEALGITLAE
NVENIRASIA HLVAQGREAI FDAEHFFDGH KANPDYALEC IHAAYSAGAR WVVLCDTNGG
TLPDEIAGIT HAVIASGLPG ECLGIHTHND TETAVAGSLA AVQAGARQIQ GTLNGLGERC
GNANLTTLIP TLLLKEPYRS SYDTGIAVET LDGLTRLSRM LDDILNRVPH RQAPYVGASA
FAHKAGLHAS AIVKNPTTYE HIAPEIVGND RIIPMSNQAG QSNLRKRLAE AGLEVERDNP
ALPAILDAIK DREADGYSFD TAQASFELLA RRALGMLPAF FEVKRYRVTV ERRKNKYNQM
VSLSEAMVVL KVGGEKKLSV SESMDETGSD RGPVNALSKA LAKDLGPYQE FIKDIRLVDF
KVRITQGGTE AVTRVIIDSE DSQGRRWSTV GVSPNIVDAS FEALLDAVNW KLIHEGAAVL
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