| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1937 |
|---|
| Symbol | |
|---|
| ID | 3934388 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 1927282 |
|---|
| End bp | 1928736 |
|---|
| Gene Length | 1455 bp |
|---|
| Protein Length | 484 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637904291 |
|---|
| Product | D-lactate dehydrogenase (cytochrome) |
|---|
| Protein accession | YP_509879 |
|---|
| Protein GI | 89054428 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00387] glycolate oxidase, subunit GlcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00614579 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCACTGC TTGCAGATCT GCCGCGCAAT GAGGATGGAA TTGCCGCAAC TTTGGGCATT
TTGACCCAGA TGTTCGGCCC GCGGGTGGAA CAGGGTCAGG CGCTGCGGGA TCAGCACGGG
CACACAACGA CCTGGCTGCG CAATCAGCCG CCCGATGCGG TGATCTTTCC CGAGACGACG
CAGGAGGTGC AGGAGATCGT GCGGGTCTGC GCCACCCATC GCGTGCCGAT TATCCCCTTC
GGCACCGGCA CGTCCCTTGA GGGGCATGTG AATGCGCCTG CCGGTGGAAT ATCCATCGAT
TTCAGTCAGA TGGACGCCAT TCTTGATGTG CATGCGGAAG ATATGGACGT GGTGATCCAG
CCCGGCGTCA CCCGCAAGGC GCTCAACACC CACCTCCGCG ACACGGGCCT GTTTTTCCCG
ATTGATCCCG GGGCCGATGC GTCGCTTGGC GGGATGGCGG CCACGCGGGC CAGCGGCACC
TGCGCGGTGC GTTACGGGAC CATGAAGGAC AATGTTCTGG CGCTGAAGGC GGTGATGCCG
TCGGGCGAGG TGATCCAGAC GGCGGCGCGG GCGCGCAAGA CATCGGCCGG GTATGATCTG
ACCCGGCTGA TGGTGGGCTC GGAAGGGACG CTTGGCCTGA TCACCGAGTT GACCTTGAAG
CTGCACGGCA TTCCGGAGGC GACGTCTGCG GCGACCTGTT CCTTCCCCAG CGTGGAGGCC
GCATGCACCG CCGTCATCGC CTGTTTCCAA TATGGCCTGC CGCTGGCGCG GATTGAGCTG
CTCAACGCCC TGCAAGTGCG CGCCTGCAAT GCCTATTCCA ACCTCTCCCT GCCCGAAACA
CCCCTTCTGT TGCTGGAATT CCACGGGTCC GAGACCGGCG TGACCGAACA GGCCGAGGCC
TTCGGAGACA TCGCCGGCGA TTGCGGCGGG ACCGGCTTCA CCTTCACCAC GCGGGAGGAG
GAGCGGACCA AGCTGTGGCA GGCCCGCCAC GATGCCTATT GGGCCGCGCT GCAACTGCGT
CCCGGGGCGC GCGGCATCTC CACTGACGTC TGCGTTCCGA TCAGCCGCCT GGCCGATTGC
GTCACCCGGA CGGAGGCGAA ACTGGCCGAA TTGGACTTCA CCGCCCCCAT CGTGGGCCAT
GCGGGCGACG GCAATTTTCA CACGCTGCTG CTGGTGGATA TGGAGAACCC CGAAGAGATC
GCCAGGGCGG AGGGCTATGT GGGCTGGCTG GCGGATCTGG CGATTTCGAT GGACGGGACC
TGCACTGGCG AACATGGTAT CGGTCAGGGC AAGGCCAAGT ATCTGGAGCG GGAGATTGGC
CCCGGCGCGA TGGATGTGAT GGCCGCAATC AAGCGCGGCA TTGACCCGCA CAACATCTTC
AATCCAGGAA AGATGAACCT GCCGCCCCTT GGGGACACGG ACCTGTCGTC CCCCCAGGGC
AAGGCCGCGC GCTGA
|
|---|
| Protein sequence | MALLADLPRN EDGIAATLGI LTQMFGPRVE QGQALRDQHG HTTTWLRNQP PDAVIFPETT
QEVQEIVRVC ATHRVPIIPF GTGTSLEGHV NAPAGGISID FSQMDAILDV HAEDMDVVIQ
PGVTRKALNT HLRDTGLFFP IDPGADASLG GMAATRASGT CAVRYGTMKD NVLALKAVMP
SGEVIQTAAR ARKTSAGYDL TRLMVGSEGT LGLITELTLK LHGIPEATSA ATCSFPSVEA
ACTAVIACFQ YGLPLARIEL LNALQVRACN AYSNLSLPET PLLLLEFHGS ETGVTEQAEA
FGDIAGDCGG TGFTFTTREE ERTKLWQARH DAYWAALQLR PGARGISTDV CVPISRLADC
VTRTEAKLAE LDFTAPIVGH AGDGNFHTLL LVDMENPEEI ARAEGYVGWL ADLAISMDGT
CTGEHGIGQG KAKYLEREIG PGAMDVMAAI KRGIDPHNIF NPGKMNLPPL GDTDLSSPQG
KAAR
|
|---|
| |