| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1901 |
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| Symbol | |
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| ID | 3934352 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 1890431 |
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| End bp | 1892785 |
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| Gene Length | 2355 bp |
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| Protein Length | 784 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637904255 |
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| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
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| Protein accession | YP_509843 |
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| Protein GI | 89054392 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.646263 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGTTTG GATTGGACGG GGTCGAAATT GGCCTGATCA TCGTGTTCCT CACGCTCTTT
GGCGGGATCA TGACGGGCTT CCCGGTGGCG TTTTCCATCG GCGGTGCAGG CGTGATTTCC
TTTGCGATCA TTGCGGCGCT GGACAGTTCC GGCCTGCTGA TCCATCAGGC GGTGGACGTG
CGGGCCGACG AATACCTGGC CCTGATCGCC GACGGCGTCC CCCGAGAGAC GATATCAACC
TTCCGATACC CGGAATTGCC CCGCATAGAA GAGGCCCTGT TCCCCGGTGG CTGGGAAGTG
GCGCTGGATC GCAACCTGTC GTTCATCGTC AACCGCATGA ATGAGCGTGT GATTGCGGGA
CAATCCATCG AGATTCTGCT GGCCGTTCTG ATGTTCGTGA TGATGGGCAT CACGCTGGAA
CGCTCCAAGA TCGCCAACGA CCTGCTGACC ACGATGGCGC GCGTGTTTGG CCCGCTGCCC
GGCGGTCTGG CCGTGTCCAT CGTGATCGTG GGCGCGTTTC TTGCGGCCTC CACCGGCATC
GTCGGCGCGA CCGTGGTAAC CATGGGCCTG CTGGCCCTGC CCACGATGTT GCGCAACAAC
TATTCGCCTG AACTGGCCAC GGGCGTCATC GCCGCGTCGG GCACGTTGGG GCAGATCATT
CCGCCCTCCA TCGTGATCGT CCTGCTTGGC ACATTGGCCG GGGACCTCTA CGCCACCGGG
CAGGAGGCCC GCGCCGTGGC CGCTGGGTGC CGCGATGCAT TGACCTATCT GGGGGAGCCT
GCGGTTCTGT CGGTGGGGAC GCTGTTCCAG GCCGCGCTGC TGCCCGGGAT CTTCCTGGCA
TTCCTCTATG GCGCCTACTC CTTTGGCTAC GCGCTGGTGT TCCCCTCCAA GGCGCCGGCC
GTCCAGATGG GTGAAAGCTC GGGGGAACCG GTGACCCGCT CTGAGGGGCT GACATGGTTC
CTTGGCGTAC CTGCGGCGAT CATCATCGCG GTCAGCCTCG CGGCGTCAGG CGGTCTTGTG
GGGGGTCAGT CGTTCAGCGT CTCAGACATG TCCGATGGCC CGTCGAGTGC TGCACTGCGC
ACGAATGTGT CCGAGCAATG CGCCGCCGGT ATGATCGAGC TGCATGGCCA AGAGGCCTGG
GACGCTGCCG TCGCCGAACA GGCCGCGATT GAGGCCGGGG GCGAGGACGA AGCCGCCCAT
GAGCGGTCCG ATGAGGAGAT GATCGCCGCC ATTGATGCCG CGATTGCGGC GATCCCGCCT
GTCGGCAGTG GCGTGGCCGC GCTGTTCGTG TTTCTGGCGC TGGTCCTGAC CCTTGCGCGT
GGCATTTCGC CGTCCTCCTC GCCGGTGCCG CTGATGATTG GCGGTCTGGG TGTGGCGCTC
GCGTTCATGG CCGATATCGC GTTCCTTGGC CCATTGACCG GCCCGGGGAC GACCTTCGCG
ATCCTCGCGA TCCCGTTCTT TCTCACGGCC TATGGCTGCT ACCACGCCGT TGGTCGCCTG
TCCCAGAACG AGCTTCTGCG CGTCGTCTTC CCGCCTCTGG TGCTGATCGT GGCGGTCCTG
GGCTCGATCC TGGGCGGTAT CACCAACCCC ACGCCCGCTG CGGCATTGGG GGCGGCAGGT
GCCATCATGC TGGCCGCCTA CCGAAAGTTG TCGGATGATC GGCGCGGCGC AAAGATGATA
ATTTGGGCGT CCTTTGCCAT TGTCATCATG ATCATCGTGG GCGTGAACTT TGACCTGCGC
ATGGGGCGCG CCGATGTGAA CCTGGCTGAC TGGATCGCCT ATATCGTGAC GCAGTTTGCC
TACCACTTCG CGTTTTTCGG CCTGTTATTT GCCTGCTGGA CGCTGCTGAA GACGTCGGTC
CTTGGTCCGG TGGTGCGAGA GACGGCGAAG GTCACGAGCA TGGTGTTCAC GATCCTCATT
GGCTCTCAGG TCCTGAACCT GACGCTGATC GCCTTTGGCG GAGAGCATTA CATCCAGCAA
TTCCTGCGGG CGTTTGATCA GGAGTGGGTG GTGTTCCTGC TGGTGATGGC GATCCTGTTC
GTTCTGGGCT TTGTGCTCGA CTTCCTGGAG ATCATCTACA TCGTGATCCC CATCGTGGGG
CCGGTGATCT ATGGCGGCAC GTTGGATCCC AAATGGGTGA CGATCATGAT CGCGGTGAAC
TTGCAGACGT CCTTCCTGAC GCCACCGTTC GGATTTGCGC TCTTCTACCT TCGAGGGGTC
GCGCCGAAAT CGGTGACGAC CGGGCATATC TACCGAGGGG TGCTGCCATT CGTCGGCATC
CAGGTGTTGG GCCTCGCGAT CCTGTGGTTC TTCCCGGGCA TCGTGACCAT TGTGCCGGAT
CTGCTGCCGA ACTGA
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| Protein sequence | MLFGLDGVEI GLIIVFLTLF GGIMTGFPVA FSIGGAGVIS FAIIAALDSS GLLIHQAVDV
RADEYLALIA DGVPRETIST FRYPELPRIE EALFPGGWEV ALDRNLSFIV NRMNERVIAG
QSIEILLAVL MFVMMGITLE RSKIANDLLT TMARVFGPLP GGLAVSIVIV GAFLAASTGI
VGATVVTMGL LALPTMLRNN YSPELATGVI AASGTLGQII PPSIVIVLLG TLAGDLYATG
QEARAVAAGC RDALTYLGEP AVLSVGTLFQ AALLPGIFLA FLYGAYSFGY ALVFPSKAPA
VQMGESSGEP VTRSEGLTWF LGVPAAIIIA VSLAASGGLV GGQSFSVSDM SDGPSSAALR
TNVSEQCAAG MIELHGQEAW DAAVAEQAAI EAGGEDEAAH ERSDEEMIAA IDAAIAAIPP
VGSGVAALFV FLALVLTLAR GISPSSSPVP LMIGGLGVAL AFMADIAFLG PLTGPGTTFA
ILAIPFFLTA YGCYHAVGRL SQNELLRVVF PPLVLIVAVL GSILGGITNP TPAAALGAAG
AIMLAAYRKL SDDRRGAKMI IWASFAIVIM IIVGVNFDLR MGRADVNLAD WIAYIVTQFA
YHFAFFGLLF ACWTLLKTSV LGPVVRETAK VTSMVFTILI GSQVLNLTLI AFGGEHYIQQ
FLRAFDQEWV VFLLVMAILF VLGFVLDFLE IIYIVIPIVG PVIYGGTLDP KWVTIMIAVN
LQTSFLTPPF GFALFYLRGV APKSVTTGHI YRGVLPFVGI QVLGLAILWF FPGIVTIVPD
LLPN
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