| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1727 |
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| Symbol | |
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| ID | 3934175 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 1717028 |
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| End bp | 1719574 |
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| Gene Length | 2547 bp |
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| Protein Length | 848 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637904078 |
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| Product | TRAP transporter, 4TM/12TM fusion protein |
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| Protein accession | YP_509669 |
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| Protein GI | 89054218 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.404673 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGACC AGAGCGCCGC AAAAGACCAG GTAGAAGGCC CCGTCATCGC GGATGGCGTG
GATGAGGAGC CGGTGGAAAG CAACCGCCGC CTGTTTGAGG GCCGGTCGTT CCTGATCGTC
GGTATCCTGT CGGTCCTCTA TGCTGGCTTC CACATGGCCG CGCTGAACGG ATTGTCGCTG
TCCTCCATGA CCGGGATCGA CCTGCCTTTC CTGCCGCAAT TCCCGATGGA GACGTGGAAT
TTCCGCATCG TCCACATCGC GGGCGCGCTG GCGCTGGGGT TCATGTTGTT CTCCGCCCAT
ACCTTTGGCA CGGACGCCGG GTCCGATCGC TCCACCAAGG TGATCTCCCT CATCGCGGCC
CTCTTCGCAT TGCCCGCCCT GTTCGCAGGC GTCACGGTTC TGGGCTTCAT CGGCCAGATC
AACGGTGGCC AGCTGCCCCA AATGGGCGGC CTGACCACCT GGGCCGCCTT CCCCGGCACG
GATATCTACA ATGCGGAGGT CTACAGCTTC GGCATCCCGC TGCTGGTCGC CACCGGCGGC
GCGATTGTGC TTGGCTGGTT CGAGCGTCAG GGCCGCGGGT CCTTCGCTGC GTCCGACATC
GTGCTGGCCC TCTGCGCGCT GGTCGTGGCG CTTTACCTGA TCCCGATCTA TTCCACCGCC
GCACGCAACT CCGTCGGCAC GTCCTTCGTG CCCATCGGCG TGGCCTTTGC CGCCACGGCG
GGCGCGGCCA TGATCCTGGA GCTGACCCGC CGCGTTGCGG GCCTGGCGCT GGTGATCATC
ACCGGTATCT TTCTCATTTA CACCTTCACG GCTCACCTCC TGCCCGGCAT CCTGGCGGTG
CAGAACCCCT ATGACTGGCA GCGCTTCTTC GGCTTCGTCT ACACCGATGC GGGCATCCTT
GGGCCAACCA CTGCCGTGTC CTCCACCTAC ATCATCCTGT TCATCATCTT CGCAGCCTTC
CTTCAGGCCT CCAAGGTGGG CGACTACTTC GTGAACTTTG CCTTCGCCGC CGCCGGGCGC
GCGCGTGGCG GCCCCGCCAA GGTGGCGATC TTCGCATCGG GCCTGATGGG CATGATCAAC
GGCACCAGCG CCGGTAACGT GGTCGCCACA GGCTCCCTCA CGATCCCGCT GATGAAGAAG
GTCGGCTACC ACAAGAAAAC TGCCGGAGCG GTTGAGGCCG CAGCTTCCAC AGGCGGGCAG
ATCATGCCGC CGATCATGGG CGCAGGCGCG TTCATCATGG CCGAGATCAC CGGCATCCCC
TATCAGGACA TCGCCATCGC GGCGCTGATC CCCGCCGTCC TCTATTTCAC CTCGATCTAC
TTCATGGTGG ATTTCGAGGC CGCGAAACTG GGCATGCGCG GGATGCGAGA GGATGAGCTG
CCGAAGTTCA AGGAAATGGC GAGGAAAGTC TTCCTGTTCC TGCCGATCAT CATCCTGATC
TTCGCTTTGT TCATGGGCTA TTCGGTGATC CGGGCCGGAA CCCTCGCCAC CATCGCCGCC
GTTGTCGTCT CCTGGGCGGT GCCCGAACAT TTCACCCCGC GCGGTGGCTG GTCAATCCAG
CGTCTGTTCG TGCTGGCGAT CACGGCGATG ACCATCGCGC TCACGCTGGT CTGGATCGTC
ACACCCGCGC CCGCGCCGGG CCAACCCCAG CCCGCCCTGA TCACCAGCCT CGGCACGATC
ACCGGGCTGA TCATCGTGGC CGCCTTCGTC TATATCTCCA TCGTCGAGTT CATGAAGCCC
GACAGCGCCG TGGGCCTTGG CCTCAGGGGC CTGCTGCACG GGCTGGAGAT CGCGGGGGTC
ATGTCGATCC AGATCATCGC GGTCTGTGCC TGTGCGGGCA TCATCGTGGG CGTGATCAGC
CTGACGGGCG TTGGCGCGCG CTTCTCCGCC GTGCTGCTGG ACCTCGCCGG TGTCTCCCAG
CTTCTGGCGC TCTTCTTCGC CATGTGCATC GCGATCCTTC TGGGGATGGG CATGCCGACC
ACGGCCGCCT ATGCGGTCGC GGCCTCCGTC GTCGCCCCGG GCCTCGTGTC CCTCGGCATC
CCGCAGCTGA CGGCGCATTT CTTCGTCTTC TACTTCGCCG TCGTCTCGGC CATCACGCCG
CCCGTGGCGC TGGCCTCTTA TGCGGCGGCG GGCATCTCGG GCGCGAACCC GATGGAGACC
TCTGTCGCCT CCTTCAAGAT CGGCATCGCC GCGTTCATCG TGCCCTTCAT GTTCTTCTAC
AACGGCAGCC TGCTGATGCA GGGCCCCATC GTGGAGGTTG CAGGCGAGAT GGTGCATGAG
GCGCCTGCCT GGTACGACAT CGCCCGCGCA GGCATCACCG CCATCCTTGG CATCTTCCTG
CTGACGTCGG GCATCCAGGG CTGGTTCCTG GGCGGACGGG CCGTCTGGTT CCTGCGCGCG
GGCCTGATCA TCGCGGCGCT TCTACTGATC GCAGGCGGCA TCGCGACGGA CCTCGCCGGT
GTTGGCCTGG CCGTGGCGAT CTTCCTGATC CAGCGGCTCG TCCGACCGGC CCAGGGCACG
TCCATTCCGG TGCGCGGGGC AGATTAA
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| Protein sequence | MTDQSAAKDQ VEGPVIADGV DEEPVESNRR LFEGRSFLIV GILSVLYAGF HMAALNGLSL
SSMTGIDLPF LPQFPMETWN FRIVHIAGAL ALGFMLFSAH TFGTDAGSDR STKVISLIAA
LFALPALFAG VTVLGFIGQI NGGQLPQMGG LTTWAAFPGT DIYNAEVYSF GIPLLVATGG
AIVLGWFERQ GRGSFAASDI VLALCALVVA LYLIPIYSTA ARNSVGTSFV PIGVAFAATA
GAAMILELTR RVAGLALVII TGIFLIYTFT AHLLPGILAV QNPYDWQRFF GFVYTDAGIL
GPTTAVSSTY IILFIIFAAF LQASKVGDYF VNFAFAAAGR ARGGPAKVAI FASGLMGMIN
GTSAGNVVAT GSLTIPLMKK VGYHKKTAGA VEAAASTGGQ IMPPIMGAGA FIMAEITGIP
YQDIAIAALI PAVLYFTSIY FMVDFEAAKL GMRGMREDEL PKFKEMARKV FLFLPIIILI
FALFMGYSVI RAGTLATIAA VVVSWAVPEH FTPRGGWSIQ RLFVLAITAM TIALTLVWIV
TPAPAPGQPQ PALITSLGTI TGLIIVAAFV YISIVEFMKP DSAVGLGLRG LLHGLEIAGV
MSIQIIAVCA CAGIIVGVIS LTGVGARFSA VLLDLAGVSQ LLALFFAMCI AILLGMGMPT
TAAYAVAASV VAPGLVSLGI PQLTAHFFVF YFAVVSAITP PVALASYAAA GISGANPMET
SVASFKIGIA AFIVPFMFFY NGSLLMQGPI VEVAGEMVHE APAWYDIARA GITAILGIFL
LTSGIQGWFL GGRAVWFLRA GLIIAALLLI AGGIATDLAG VGLAVAIFLI QRLVRPAQGT
SIPVRGAD
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