| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1685 |
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| Symbol | |
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| ID | 3934133 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 1669181 |
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| End bp | 1669747 |
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| Gene Length | 567 bp |
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| Protein Length | 188 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637904036 |
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| Product | ribosomal large subunit pseudouridine synthase E |
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| Protein accession | YP_509627 |
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| Protein GI | 89054176 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCAGAC GCGCGCCGAG GGGGCACCAT ATGCTGATCG CGTTTAACAA ACCGATGAAC
ACGCTGTCTC AATTCACCTC CGAGGGCGGC TGGCCCGCAC TGGATGGGTT TGGCCTGCCC
AAGGGCGTCT ATGCCGCCGG GCGGCTGGAT CGTGACAGTG AGGGGCTGTT GCTGCTGACA
GACGATGGCG GATTGCAGGC GCGGATATCC TCGCCGAAAT ACCGGTCTCC CAAGGTGTAT
TTCGCATTGG TCGAAGGCGT GCCCGATGAC GCCGCGCTGG ACCATTTGCG CCGGGGCGTG
ACGCTGAAGG ACGGGCAAAC GGCCCCATGC GAGGCCGAGG CGGTCGCAGC GCCCGATTGG
ATATGGGACC GGGATCCGCC AGTCCGCATT CGCAAATCCA TCACCGACAC GTGGCTAAAG
CTGACATTGA CGGAAGGCCG CAACCGTCAG GTGCGACGCA TGTGCGCGGG CGTGGGTTTC
CCGGTGATCC GGCTGGTGCG GTTTTCCATT GGGCCCCATG ATATCAGGGA CTTACCCCCC
GGCATGTGGC GGGAATTGGC CCCATGA
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| Protein sequence | MVRRAPRGHH MLIAFNKPMN TLSQFTSEGG WPALDGFGLP KGVYAAGRLD RDSEGLLLLT
DDGGLQARIS SPKYRSPKVY FALVEGVPDD AALDHLRRGV TLKDGQTAPC EAEAVAAPDW
IWDRDPPVRI RKSITDTWLK LTLTEGRNRQ VRRMCAGVGF PVIRLVRFSI GPHDIRDLPP
GMWRELAP
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