Gene Jann_1621 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_1621 
SymbolrpsR 
ID3934069 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand
Start bp1609552 
End bp1609779 
Gene Length228 bp 
Protein Length75 aa 
Translation table11 
GC content61% 
IMG OID637903972 
Product30S ribosomal protein S18 
Protein accessionYP_509563 
Protein GI89054112 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0238] Ribosomal protein S18 
TIGRFAM ID[TIGR00165] ribosomal protein S18 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0249871 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGCAA AACCATTCTT CCGCCGCCGC AAGACCGACC CGTTTGAGGG CGAGAACGCG 
CCGAAGATCG ACTATAAAGA CACCCGCCTC CTGCAACGCT ACATTTCCGA GCGTGGCAAG
ATCGTCCCCT CCCGTATCAC CGCTGTCGGT GCCAAGAACC AGCGTGCGCT CGCCAAGGCG
ATCAAACGCG CGCGGTTCCT GGCCCTGCTG CCCTACGCCG TCAAATAA
 
Protein sequence
MAAKPFFRRR KTDPFEGENA PKIDYKDTRL LQRYISERGK IVPSRITAVG AKNQRALAKA 
IKRARFLALL PYAVK