| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1558 |
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| Symbol | |
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| ID | 3934006 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 1530741 |
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| End bp | 1534034 |
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| Gene Length | 3294 bp |
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| Protein Length | 1097 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637903909 |
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| Product | DNA polymerase III, alpha subunit |
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| Protein accession | YP_509500 |
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| Protein GI | 89054049 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.156224 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACAACC AGCGCCCAAG GCGCACCATC GAGGAGGGTG GCTTCAAACC GAACCCGAAG
GCCGATTATG TCGAGCTGGG TCTGACAACC TGCTTTTCCT TTCTGCACGG CGCCTCCGAC
GCCGTCGATC TTGCCACCAC CGCCCATGGG TTGGGGTATG ACAAACTGGG CTGCGCAGAT
CTGAACACCA TGGCCGGTGT CGTGCGCCTG CATGCCGAGG CCCTGAAAGC GCAGATCACG
CCCGTCATCG GATGCCGCCT GCGATTGGTG ACCGGGGAAG ACTTCCTTGC CTATCCGCGC
GACCGGGCCG CCTATGGCAG GCTTTGCACG CTTCTGTCCA AGGGCAAGAT GACCGATGTC
GATGGCGCAT GGCAGGCCAA GGGAGCATGC GACATCACGC TGGATGATCT GGCGGGGCAC
AGCAAGGACG TCCAGTTGAT TGCGTTGCCC GGCCCGCGCC TTGACCATTT TGAAGCTGGT
TTCAAACGCC TGATCCGCGC GCTTCCCACG CTGCGTCATA TCGCGGTGAG TTATCTGTAC
GAAGGGGATG ATCGCGCCCG GATCAATCGT CTGGACAGGC TCGCCCAAGC CCATGGTCTT
GGGATCATGG CCACCAATGA CGTGCGCTAT CACGCCCCCG ACAGACGCCC GTTGCAGGAT
GTGATGACCT GCATCCTCCA CAAAACGACG ATCCAAAAGG CCGGGTTTCT GCTGAACGCC
AATGCGGAAC GGCACCTGAA ATCCCCGGCG CAGATGATCC AGCTGTTCGC TCAATGGCCC
CACGCCATCC GGGCGACGCG GGCCATCGCG GATGCCTGCA CATTCGATCT GCGGGAACTG
GCCTATGAAT ACCCCAAAGA GACCGTCCCG GAGGGGCGCA CGCCGCAGGG CTATCTTGAA
GAACTGACAT GGAAAGGGGC GGCCCGGCGG TATCCGGACG GGATACCGGA TGCGATCAGC
ACGACATTGC GAAAGGAGCT GGCGCTGATC AAGAAGATGG ATATTCCGCA GTATTTCCTG
ACGATTGAGC AGATCGTGGA CTATGCCCGC CATAAATGTG ATCCGCCGAT CCTGTGTCAG
GGCCGGGGGT CGGCCGCAAA CTCTGCCGTG TGTTATGTCC TGGGCATTAC TGCGGTTGAT
CCCAACACCA ACGATCTGTT GTTTGAACGC TTTATCAGCG AAGAACGCAA AGAACCGCCT
GATATCGACG TTGATTTCGA ACATGAGCGG CGCGAAGAGG TGATCCAGCA TATCTATAAC
AGATACGGGC GCGACCGGGC CGCACTTTGT GCCACCGTGA TCCATTATCG CCCCCGCATG
GCGGTGCGCG AGGTGGGCAA GGTGATGGGC CTGTCCGAGG ATATCACCAG CGCCCTGGCC
AAAACGATCT GGGGCTCCTG GGGGCGGGAG GTCGGCGCGC GGGAGGCGGC GGAAGCGGGC
ATTGATCTCA AAGACCCGTT GATGGCGCGG ACCATTAAAC TGGCTGACCA GATGATCGGC
ATGCCCCGCC ATCTGGGTCA GCATGTTGGC GGCTTTATCC TGACCGAAAA GAAGTTGAAC
GAAACCGTAC CCATCGGCAA CGGGGCCATG GCTGACCGGA CGTTCATCGA ATGGGACAAG
GACGACATTG ATGAGTTGCG CATCCTGAAG GTGGACATTC TGGCGCTTGG TATGCTGACC
TGCATCCGCA AGGCGTTTGA CCTGATCAAA GCGCATTATG GGCGCACGCT GACCCTTGCC
AGTATCGAAC AGGGCGATCG CGCGACCTAC GATATGCTTT GCAAGGGCGA CAGCCTTGGT
GTCTTTCAGG TCGAAAGTCG GGCGCAGATG AACATGCTCC CCCGCCTGAA GCCGCGCGAA
TTCTATGATC TGGTTATTCA GGTCGCCATC GTGCGGCCCG GGCCCATCCA GGGGGACATG
GTGCATCCCT ATCTGCGCAG ACGTGCAGGC AAGGAGCCCG AAGATTACCC ATCCCCCAAA
CCGCCCCATG ACCCCGAAGA ATTGCGCAAG GTGTTGTCGC GCACCAAGGG CGTGCCGATC
TTTCAGGAAC AGGCCATGAA ACTTGCCATG GTCGCCGCCG AATTCAGCCC GGATGAGGCC
AACCAGCTGC GCAAAGCGAT GGCGACATTC CGATCAAAGG GGACAATCGG GGAACTTGAG
GAGAAAATGG TCAGCCGCAT GATCAACCGC GGCTATGATC CGGAATTTGC GCATCGCTGT
TTCAACCAGA TCAAGGGGTT TGGGGATTAT GGGTTCCCCG AAAGCCACGC GGCCAGCTTC
GCGCATCTGG TATACATCTC CAGCTGGATC AAATGCCATT ATCCGGATGT CTTTTGCGCA
GCCTTGCTCA ACTCTCAGCC CATGGGGTTT TATGCCCCGG CCCAGATCGT CCGCGATGCC
CGCGAGCATG GCGTGATCGT GCGCGCGGCA GATGTGAATT ACAGTGGGTG GGATACGACG
CTGGAGCCTG TAGGTCAGGG TCAGTTTGCC GTCCGTCTGG GCCAGCGGCA GATCGACGGG
ATGCGGCAGG ACGTGGCAGA TCGTATCGTC ACGGCCCGGC ACACGCCCTT TACCGATCTT
ATCGACCTGA GACAGCGCGC GCAGACCGAT GCCGGATCGC TGCGCAAACT GGCGGCGGCA
GACGCCATGC GGTCCATGAT GCTGGACCGC AGGCAGGCCT TGTGGGAAAC GCGCGCGCTT
CACGACGCAC AGGATTTGCC GCTGTTTGCC GAGCAGAAGG ATGAGGGGGA TGAGATCCGT
TTTGACCTGC CCGAAATGCC GATTTGCGAG CATGTCGTCG CCGATTATCA GACGACGCGG
CTATCGCTCA AGGCACATCC GATGTCTTTC TTGCGCAAGA GTATGGAGAG ACAAGGCTAT
CACCACACGG GCGCGTTGGC GCATATGCGC AATGGCCAGA GTGTGAAACT GGCCGGAATT
GTCTTGATCC GCCAGCGTCC CGGCAGCGCA AAAGGGGTTT GTTTCATTAC TGTCGAGGAC
GAAATTGGTG TCGCCAATCT TGTGGTCTGG CCAAAGGTGA TGGAGGCGTT TCGCAAAGTG
ATCATGGGCG CCCGGATCAT TGATGTGCGC GGTGTTGTGC AGCGCAGTGA CGATGTGATC
CATGTGGTCG CCCATCACCT CGCAGATCGC AGCGATGCGT TGGAGCGGCT GTCAAACGAC
ATCATGGAGC CCCCCCTGGC GCGCGCAGAC GAGGTCAAAC GCGCCTTGCC ACACGGCACT
CATGGGCATC CACGCAACGT GCGCGTAATC CCGAAGTCCA GGGATTTTCA TTGA
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| Protein sequence | MDNQRPRRTI EEGGFKPNPK ADYVELGLTT CFSFLHGASD AVDLATTAHG LGYDKLGCAD
LNTMAGVVRL HAEALKAQIT PVIGCRLRLV TGEDFLAYPR DRAAYGRLCT LLSKGKMTDV
DGAWQAKGAC DITLDDLAGH SKDVQLIALP GPRLDHFEAG FKRLIRALPT LRHIAVSYLY
EGDDRARINR LDRLAQAHGL GIMATNDVRY HAPDRRPLQD VMTCILHKTT IQKAGFLLNA
NAERHLKSPA QMIQLFAQWP HAIRATRAIA DACTFDLREL AYEYPKETVP EGRTPQGYLE
ELTWKGAARR YPDGIPDAIS TTLRKELALI KKMDIPQYFL TIEQIVDYAR HKCDPPILCQ
GRGSAANSAV CYVLGITAVD PNTNDLLFER FISEERKEPP DIDVDFEHER REEVIQHIYN
RYGRDRAALC ATVIHYRPRM AVREVGKVMG LSEDITSALA KTIWGSWGRE VGAREAAEAG
IDLKDPLMAR TIKLADQMIG MPRHLGQHVG GFILTEKKLN ETVPIGNGAM ADRTFIEWDK
DDIDELRILK VDILALGMLT CIRKAFDLIK AHYGRTLTLA SIEQGDRATY DMLCKGDSLG
VFQVESRAQM NMLPRLKPRE FYDLVIQVAI VRPGPIQGDM VHPYLRRRAG KEPEDYPSPK
PPHDPEELRK VLSRTKGVPI FQEQAMKLAM VAAEFSPDEA NQLRKAMATF RSKGTIGELE
EKMVSRMINR GYDPEFAHRC FNQIKGFGDY GFPESHAASF AHLVYISSWI KCHYPDVFCA
ALLNSQPMGF YAPAQIVRDA REHGVIVRAA DVNYSGWDTT LEPVGQGQFA VRLGQRQIDG
MRQDVADRIV TARHTPFTDL IDLRQRAQTD AGSLRKLAAA DAMRSMMLDR RQALWETRAL
HDAQDLPLFA EQKDEGDEIR FDLPEMPICE HVVADYQTTR LSLKAHPMSF LRKSMERQGY
HHTGALAHMR NGQSVKLAGI VLIRQRPGSA KGVCFITVED EIGVANLVVW PKVMEAFRKV
IMGARIIDVR GVVQRSDDVI HVVAHHLADR SDALERLSND IMEPPLARAD EVKRALPHGT
HGHPRNVRVI PKSRDFH
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