| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1546 |
|---|
| Symbol | |
|---|
| ID | 3933994 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 1516603 |
|---|
| End bp | 1517766 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637903897 |
|---|
| Product | phage integrase |
|---|
| Protein accession | YP_509488 |
|---|
| Protein GI | 89054037 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0582] Integrase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.226246 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.34056 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGGGGATA TTTTTTTGGG AAACCTAACA GCCCTTTTCA TCAGATCCGC GCCGCCCGGC
AAGTATGAGG ACGGCCATGG GTTGCGCCTG ATCAAGCGCG TGGACGGCGG CGGGCAGTGG
GTGTTTCGGT ATACCTTCCT TGGTCGCCGC CGGGAAATGG GTCTTGGCGG ACTTGTCAGC
CTCCCCTTGA AAGATGCGCG TGAGATGGCC AGCGACTACC GAACCATGGT GGTCAAAGGC
GTTGATCCGA TCGAGCATCG GCGGCGGGAG CGCGGCGCTG CGATGAGCGG TCGCCATTTG
TTGCGGGATA TCGCGCTGGA TGCGTTTGAG AGCCGCAAGG CCGACCTCAA GGGCGACGGG
ATCGCGGGGC GCTGGTTCAG TCCGTTGAAG CTTCACGTGC TGCCCAAGCT CGGGCGCATG
CCGGTGACCG AGATCACCCA AGTCGATGTC CGGGATGCGC TCGAGCAGAT CTGGCACGCG
AAGGCCGCAA CGGCCAAGAA GGCTGCAGAC CGCCTAAAGA TCGTCCTCGA TCATGCAGCT
GCTCTGGGCC TTGATGTCGA CCTGCAAGCC GTTGCAAAGG CGAAGCAACT TTTGGGTCGG
CAGCGGCATG AAACGACGTC GATCCCGAGC ATGCCCTGGC GTGATGTCCC GGCGTTCTAC
ACGTCCCTTG AGGAACCCAC GATCACACAT CTGGCGCTTC GTTTGCTTAT CCTAACAGGT
CTACGCTCTG CGCCTGTGCG GTTGGCGCGG ATTGATGAGA TCGACGGCAA TGTCTGGACA
ATCCCGGCCG AGAACATGAA GGCGCGGGTC GGCGTTGCAG AGGACTTCCG TGTGCCGCTC
AGCGATGAGA CGCAGCGTAT CATCGACCTC GCCCGTCCCT ACGAGCGCGA TGGCTATCTG
TTTCCGTCAG TTCGCAAGGG GGTCATCAGT GATGCAACGA TGGCGCGGCT GATGGAGCGC
AGAGAGTTGG AAGCACGCCC GCATGGATTC AGAACAAGCT TGCGCACCTG GCTCGCCGAG
GAGACGGACG CCCCGCATGA GGTGGCCGAG ATGGTTCTGG CGCACGTCTC CGACAGCAAG
GTGGTTCGGA CCTATCGCAA GACCGACTTC CTCGATCAGC GGCGACAGCT TATGGAACGT
TGGGCACAGT TGTGCATTGG ATAA
|
|---|
| Protein sequence | MGDIFLGNLT ALFIRSAPPG KYEDGHGLRL IKRVDGGGQW VFRYTFLGRR REMGLGGLVS
LPLKDAREMA SDYRTMVVKG VDPIEHRRRE RGAAMSGRHL LRDIALDAFE SRKADLKGDG
IAGRWFSPLK LHVLPKLGRM PVTEITQVDV RDALEQIWHA KAATAKKAAD RLKIVLDHAA
ALGLDVDLQA VAKAKQLLGR QRHETTSIPS MPWRDVPAFY TSLEEPTITH LALRLLILTG
LRSAPVRLAR IDEIDGNVWT IPAENMKARV GVAEDFRVPL SDETQRIIDL ARPYERDGYL
FPSVRKGVIS DATMARLMER RELEARPHGF RTSLRTWLAE ETDAPHEVAE MVLAHVSDSK
VVRTYRKTDF LDQRRQLMER WAQLCIG
|
|---|
| |