| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1538 |
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| Symbol | |
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| ID | 3933986 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 1508108 |
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| End bp | 1509265 |
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| Gene Length | 1158 bp |
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| Protein Length | 385 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637903889 |
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| Product | LuxR family transcriptional regulator |
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| Protein accession | YP_509480 |
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| Protein GI | 89054029 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.437117 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACATCT CGCAAAAGAT CATGGCGATC TACGACATGG CTTATTCAGG CCATAAATGG
AGTGACGCTT TGGATGCATT GCTTCATGGC ACGCAGGCAA GGCACATGCT CGTCTACGAC
ACCGGCGACC GACGGGCGAT CAGCTATAGC AACCAAGCCG GTGACGCCAA TCTTTCGCAA
ACACCATCGG CCTTGAGTGA CTACAACGCG CTTATCCGTG AGCGGGGCAA TTTGAGCTTG
GATGCTCAGG GATCGGCTAT CATCCACTCT CGGGATCCAT TTACACCTGT TTTGGATCAA
GATCTGTGGA CAATAGATGA GGCTCATCAG CAACGGCCCG AAATCAAGTT CACGGTCGAT
AGGCTTAGTG TTTTCAGGAG GTTCTATGTA AACCTTTCCG AGGATCCGCA AAGTTTCACT
GCTTTGATCA CGCTCTATCC TCAACACCTT CAAGGCATTC CCCCCGGCGC AGATCAGCAG
CACGTCACAT CGCTTGCTCC GCATCTGGGA AAAGCCATGG AGATCTACCG CACGCTTTAC
GGCTTGCGGC AGAAATACAA TGCCGTATTG GCGGCCCTTG ATATGATCAC CGTCCCGATC
TGTATCGTCG ATGAGAGCGC ACGAATTATG CTGCAGAATT CAAGCGCCGA AGATCTGTTT
CAATCAAAGG ATGGTATCTG GCCAGACCGA GCTGGCCGCC TCACGTGCAG TTTCGAGGAC
GATACACGGA AGCTGAAAGG CGCCGTTTCG AGGATGTGCC ATACGTCTGT GGGCGAGGGT
GATGACAGAT CGCTAGAGAT CTCTGCCAAA CGCCGGGGCA ATGCGTTGCC GCTTACTGCG
TTAGCGACGC CCTTGCGCGA TGCCGAGATG GAGTTGGAAC CAGGCCTGAC AGGGACGCTC
CTGACGATCA TTGACAGTAC GAGAACCAGC TTCGTCAGAT ATGATCTACT CGCCAACGCC
TACGGACTGA CGCAGGCCGA ATGTCGCCTT CTGCCCCATG TTATCGGTGG TTTGTCGAAC
GTTGAATGTG CCGAACGGTT GGGTGTCAGC CCCGAAACGG TGAAAACACA AGTGGCCGCG
ATTCTGGCAA AAACTAGATG CCGAAACCGG ATCGCTCTCA TCTGGCGGGC GTATTCCTTT
TCTCCTCCGA TACGCTGA
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| Protein sequence | MNISQKIMAI YDMAYSGHKW SDALDALLHG TQARHMLVYD TGDRRAISYS NQAGDANLSQ
TPSALSDYNA LIRERGNLSL DAQGSAIIHS RDPFTPVLDQ DLWTIDEAHQ QRPEIKFTVD
RLSVFRRFYV NLSEDPQSFT ALITLYPQHL QGIPPGADQQ HVTSLAPHLG KAMEIYRTLY
GLRQKYNAVL AALDMITVPI CIVDESARIM LQNSSAEDLF QSKDGIWPDR AGRLTCSFED
DTRKLKGAVS RMCHTSVGEG DDRSLEISAK RRGNALPLTA LATPLRDAEM ELEPGLTGTL
LTIIDSTRTS FVRYDLLANA YGLTQAECRL LPHVIGGLSN VECAERLGVS PETVKTQVAA
ILAKTRCRNR IALIWRAYSF SPPIR
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