| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1527 |
|---|
| Symbol | |
|---|
| ID | 3933975 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 1496168 |
|---|
| End bp | 1496782 |
|---|
| Gene Length | 615 bp |
|---|
| Protein Length | 204 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 637903878 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_509469 |
|---|
| Protein GI | 89054018 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.093957 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACATTG CCCCCCCCAC AAGAGCGCGC GCAACCCGGG AGATCTGGCT CAACGCGGCC
TATGACCTCT TCGTATCAGA GGGCATCGAA GCGTTAAAAA TCATGCCGCT GGCTAAGACA
CTGAACCTTA CACGCACCGG TTTCTACTGG CACTTTAAGG ACCTGTCAGA GCTTCATGAC
GGCATCATCG ACATCTGGCA GACCCGCAAC ACGGGCATCA TTCTGGAACG CTGTGCGATG
CCTGCGCATA GCCTTTGCGA GGCGCTCTTT AACCTCATAG ATTGCTGGAT CGACAATGAC
TTGTTTGATG CACCGCTTGA TCTCGCGATC CGAAACTGGG CGCGCAACGA TGCCCGCCTG
CAAGCCATTG TCGATCAATC TGACAAAGAC CGACTGGCCG CCGTCAAAGC AATGTTTGAG
CGGTTTGGCA AAACAGGGGA TGCCGCGCAT TTCCGCGCAT TGACCGTCAT CCTCACCCAA
ACCGGATACT ATTCGATGGA CGTGTCCGAG CCCCGCTTGC AACGCGCACG GGCCGGGTGC
CAATACGCGG AAATCTTCGC GGGCGAGCCG CCAACTAAAG CAGAGACGAA CGTTTTCCTA
GAACGTCACC GCTGA
|
|---|
| Protein sequence | MNIAPPTRAR ATREIWLNAA YDLFVSEGIE ALKIMPLAKT LNLTRTGFYW HFKDLSELHD
GIIDIWQTRN TGIILERCAM PAHSLCEALF NLIDCWIDND LFDAPLDLAI RNWARNDARL
QAIVDQSDKD RLAAVKAMFE RFGKTGDAAH FRALTVILTQ TGYYSMDVSE PRLQRARAGC
QYAEIFAGEP PTKAETNVFL ERHR
|
|---|
| |