| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1520 |
|---|
| Symbol | |
|---|
| ID | 3933968 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 1490184 |
|---|
| End bp | 1491113 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637903871 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_509462 |
|---|
| Protein GI | 89054011 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG5006] Predicted permease, DMT superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.965674 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0966984 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGAATC AAGCCCCCAC AAACCCCGCC TCCGCCAGCG CCCCTGGTGC TATGTCCCGC
ATGTCAGAGG CGGTCCCACC GCACGCGTGG TTCGGCGTCT CTGCCGTCTT CCACTATCTC
GGTCCCGCCT TTGCCGTCCT ACTATTCCCT GTTGTTGGCG TGCTGGGGGT GGCATGGTTT
CGCATTGCTT CTGCCGCCTT AGTCTTCGCG CCGATCACAA AGCCCTGGCG TACATTCAAG
AATTCGACCA ACCGCGAACG CGTCCTGCTT CTGGCACTCG GTGGCTGTCT GGCTGTCATG
AACAGCTCTT TCTATCTCGC ATTGGACCGT TTGCCGATTG CACTGGTCGC GGCCATCGAA
TTCGTCGGGA CCATTGGTAT TGCGCTTTGG GGCTTACGGA CAGGGCGCAA TTACCTCGCC
TTTGCCGTGG CGATCTTCGG TGTCGCACTG CTGATCGACG TGCCGTCTCT TCTCGCTGCG
GATGGCGAAG CCCTCACGTC CGATCTGTTA GGTCTCTTCT GGGCTGTCCT GAATGGTTCA
CTCTTCGTCC TCTATGTCAT TCTCGGGCAC AAGATTTCCG AAGGCGGTGC ATCCGGCGGT
GTAGAGCGAC TTGGCGCGGC GATGACGGCG GCGTTCATCT TCGTGATGCC AATCGGGTTC
TTGCAGGCAT TGGAAGCTTT CGGCGCACCC CTGCTGGTCT TGGCTGGAAT TGGCGTTGGC
ATCTGTTCAT CTGTGATCCC CTATGTCTGC GACCAGCTCG CCATGTCGCG CCTGCCCCGT
GCCAGTTTCG CATTCCTGCT GGCTCTACTG CCAGCCACGG CAACCATCAT TGGTGTGATC
GTGCTGCGCC AAATCCCGAG CGCGGTAGAC GTTATCGGCG TCGTCTTAGT GATGGTCGGG
GTAGCGGTCC ACAAGCCTGC TCCCATCTGA
|
|---|
| Protein sequence | MSNQAPTNPA SASAPGAMSR MSEAVPPHAW FGVSAVFHYL GPAFAVLLFP VVGVLGVAWF
RIASAALVFA PITKPWRTFK NSTNRERVLL LALGGCLAVM NSSFYLALDR LPIALVAAIE
FVGTIGIALW GLRTGRNYLA FAVAIFGVAL LIDVPSLLAA DGEALTSDLL GLFWAVLNGS
LFVLYVILGH KISEGGASGG VERLGAAMTA AFIFVMPIGF LQALEAFGAP LLVLAGIGVG
ICSSVIPYVC DQLAMSRLPR ASFAFLLALL PATATIIGVI VLRQIPSAVD VIGVVLVMVG
VAVHKPAPI
|
|---|
| |