| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1499 |
|---|
| Symbol | |
|---|
| ID | 3933946 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 1469888 |
|---|
| End bp | 1470871 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637903849 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_509441 |
|---|
| Protein GI | 89053990 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4176] ABC-type proline/glycine betaine transport system, permease component |
|---|
| TIGRFAM ID | [TIGR03416] choline ABC transporter, permease protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00444085 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGGTGGC AGAATTTTCG GCAGTGGTGG CGCGACGACG GCATCTCGGA ATGCTCGTTC
CCCAATGATC CGGATGTCAC CGGCCCGATC ACCTTCCTGA CCGAGTGCAA ATTGCGCATC
GGCGACGGGG CGGAGGCGGT GTTTGACTGG CTGCAAAGCA ACGGCGCGTT CATTTTTGAC
GCGATGGCCG TGGCGCTGGA AGCGATGATC GAGGTGTTTC TGGCCATCCT GCAAGAACCG
CCCAACACCT CTTGGTTTCA GGATATCCGC CTGCGCGACG CGGCATTTCT CTACCCGCAG
GACTGGCATC CCTTTCTGGT CATTGCGATT TTCACGGCGC TCGCCTGGTG GATGCATCGC
GGTTGGAAAG TGCCCATGCT GGTGGCCGTC GGGTTCCTGT TCATCGTTAA TCAGGACTAT
TGGGAGGAAA CGACTGAAAG CCTGACCCTC GTCCTGTCGG CCTGCGTCGT CTGCATGGGC
GTGGGCGTGC CCATCGGCAT CGCCGTCGCT CACAGGCCCC GCCTCTATGC GTGGATGCGG
CCCGTTCTGG ACCTCATGCA AACCCTGCCG ACCTTCGTCT ATCTCATTCC GGCCATTGTG
TTTTTCGGCA TCGGCATGGT GCCGGGCCTG ATCGCTACGG TGATCTTCGT TCTGCCCGCG
CCGATCCGGC TGACCCATCT CGGCATCTCC TCTACACCGC AAAGCCTGCT TGAGGCGGCG
GATGCATTCG GCGCGACCGG CTCCCAAAAG CTCTGGAAAG TAGAGCTGCC CTACGCGCTG
CCGCAGATCA TGACGGGCCT GAACCAGACG ATCATGTTGT CGCTCTCGAT GGTGGTGATC
GCAGCGCTTG TGGGGGCGGA CGGATTGGGT GTGCCCGTGG TGCGCGCGCT CAATCAGGTG
AATACGGGCC TCGGATTTGA GAGCGGATTT ATCATCGTCG TCGTGGCCAT CGTGCTGGAC
CGAACCTTGA GGGTGAAAAC ATGA
|
|---|
| Protein sequence | MWWQNFRQWW RDDGISECSF PNDPDVTGPI TFLTECKLRI GDGAEAVFDW LQSNGAFIFD
AMAVALEAMI EVFLAILQEP PNTSWFQDIR LRDAAFLYPQ DWHPFLVIAI FTALAWWMHR
GWKVPMLVAV GFLFIVNQDY WEETTESLTL VLSACVVCMG VGVPIGIAVA HRPRLYAWMR
PVLDLMQTLP TFVYLIPAIV FFGIGMVPGL IATVIFVLPA PIRLTHLGIS STPQSLLEAA
DAFGATGSQK LWKVELPYAL PQIMTGLNQT IMLSLSMVVI AALVGADGLG VPVVRALNQV
NTGLGFESGF IIVVVAIVLD RTLRVKT
|
|---|
| |