| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1497 |
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| Symbol | |
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| ID | 3933944 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 1467824 |
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| End bp | 1468768 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637903847 |
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| Product | substrate-binding region of ABC-type glycine betaine transport system |
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| Protein accession | YP_509439 |
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| Protein GI | 89053988 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2113] ABC-type proline/glycine betaine transport systems, periplasmic components |
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| TIGRFAM ID | [TIGR03414] choline ABC transporter, periplasmic binding protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000000845092 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCTTT TTCGCGCAAC TGCGACCAGT GCCCTCGCGT TAACCCTGAC CGCCGGGGCC
GCGATGGCCG ACGCCCATGC AGACTGTGGC ACCGTGACCT TCTCGGACGT CGGTTGGACG
GATATCACCG CCACGACAGC CGCGACCTCC GTCGTGCTGG AGGCTTTGGG CTATGAGACC
GAGATCCTCG TTCTGTCCGT TCCGGTGACC TACACGTCGC TTGCGGAAGG GGATGTGGAT
ATCTTCCTGG GCAACTGGAT GCCGACGATG GAAGCCGACA TCGCGCCCTA TCGTGAGGCG
GGCACCGTCG ATACCGTCCG CGCCAACCTT GAGGGCGCGA AGTACACGCT GGCCACGAAC
GCCGCCGGGG CCGCCCTCGG GATCACTGAT TTCGCCTCCA TCGTGGCGGC CATGGACGAG
CTGGATGGCG AGATCTACGG CATTGAGCCC GGCAACGACG GCAACCGCCT GATCATGGAT
ATGATCGAGG CCGACGCCTT TGGTCTGAGC GAGTTTGAAG TCGTCGAATC CTCCGAGCAG
GGCATGCTGG CGCAGGTCGC CCGCGCCTCT GACCGGGACG AGCCCGTCGT TTTCCTCGGC
TGGGAACCGC ATCCGATGAA TGCCAATTTC GATCTGACCT ATCTGGAAGG CGGCGATGAT
TGGTTCGGCC CCAATCTGGG TGGCGCGACG GTCTTCACCA ACACCTCCGC TGGCTACGCG
GACGCCTGCC CGAACGTCGG CGCGCTTCTG AACAATCTGG AATTCAGCCT CGCCATGGAG
AACGAAATCA TGGGCGCGAT CCTGGACGAG GGCGAAGATC CTGCCGATGC CGCAACGGCC
TGGATGGCCG CCAATCCGGA TGCTGTGATG GCCTGGCTTG ACGGTGTAAC AACCTTCGAC
GGCGGCGACG CATCCGCGGC CGTGTCCGAG GCACTGGGCC TCTAA
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| Protein sequence | MTLFRATATS ALALTLTAGA AMADAHADCG TVTFSDVGWT DITATTAATS VVLEALGYET
EILVLSVPVT YTSLAEGDVD IFLGNWMPTM EADIAPYREA GTVDTVRANL EGAKYTLATN
AAGAALGITD FASIVAAMDE LDGEIYGIEP GNDGNRLIMD MIEADAFGLS EFEVVESSEQ
GMLAQVARAS DRDEPVVFLG WEPHPMNANF DLTYLEGGDD WFGPNLGGAT VFTNTSAGYA
DACPNVGALL NNLEFSLAME NEIMGAILDE GEDPADAATA WMAANPDAVM AWLDGVTTFD
GGDASAAVSE ALGL
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