| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_1492 |
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| Symbol | |
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| ID | 3933939 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 1462264 |
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| End bp | 1463934 |
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| Gene Length | 1671 bp |
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| Protein Length | 556 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 637903842 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_509434 |
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| Protein GI | 89053983 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGCAG ATTATGTCGT TATTGGAGCG GGATCAGCAG GTTGCGCGGT GACCTACAGG
TTGGCAGAGG CCGGGAAATC TGTGCTCGTT GTCGAGCATG GCGGGTCCGA TTGGGGGCCA
TTCATCAACA TGCCCGCCGC GCTGAGCTAT CCGATGGGCA TGAAGCGCTA CGACTGGGGC
TACGTGACCG AGCCCGAACC GCACATGAAC AATCGCGTCA TGGCCTGTCC CCGTGGCAAG
GTGGTCGGAG GGTCCTCCTC AATCAACGGG ATGATCTACG TTCGCGGCCA TGCGCGCGAC
TTTGACACCT GGGCAGAAAT GGGAGCCGAT GGTTGGTCCT ATGCCGACGT GCTGCCTTAT
TTCAAACGCG CGGAGACCTG GCACGGCGAC GCCGGGGAGC CCGCCTTCCG AGGCAGTGAC
GGGCCGGTTC ACGTCACCCG GGGCACGCGC AAAAATCCGC TTTATCAGGC GTTTATCGAC
GCTGGTATGC AGGCTGGTTA TGGCGCGACG GACGATTACA ACGGATATCG GCAGGAGGGG
TTCGGCGCGT TTGAGATGAC CGTTTACAAA GGTAAACGGT GGTCTGCGGC CAGCGCCTAT
CTTAGGCCCG CACTTGCCAA ACCAAACTGC GATATGGTGC GTGGCCTGGT GCAACGGATC
GAGTTTAAGG AGGGCCGGGC AACGGGTGTT CGTCTGGCAG ATGGCAGCCT GATCCGAGTG
CGCTGCGAAG TGGTCCTGTG CGCCGGTGCG ATCAATTCAC CTAAAATTCT AATGCTTAGT
GGAATTGGGC CAGCCAAGCA TTTGGCAGAA CATGGTATTT CAGTGGTCGC GGACCGTGCG
GGCGTCGGTC AAAACCTGCA AGATCACCTG GAAATGTATA TCCAGTACGC CGCATCCAAG
CCTGTTTCGA TCGCACCCTA CTGGTCGCTC TGGGGAAAAG CGGCGGTGGG CGCGCAATGG
CTGTTCACCA AGACAGGGCT GGGGGCCACC AACAACTTTG AATCCTGTGG CTTCATTCGC
TCCAGCGCAG GGGTGGAATA TCCTGATATT CAATACCATT TTCTTCCAAT CGCGATCCGG
TATGACGGCC AGATGCCCCC GGGCGGGCAC GGTTTCCAAG CCCATACCGG CCCCATGCGG
TCCCCCTCCC GGGGTGAAAT CACGCTCCGC AGTCAAGACC CAGCGCAAGC TCCGAAAATC
CAGTTCAACT ACATGTCCCA CGAAAAGGAC TGGCGGGATT TCCGCCGCGC TATCCGCCTG
ACGCGCGAGA TCTTCGCCAC CGAACCCATG GCGGAGTACG TCGATCATGA GATCCAACCC
GGCGATGCCG CGCAATTCGA TGACGCCTTG GATGCGGTCA TTCGCGAGCA TGCTGAATCG
GCTTACCACC CCTGTGGAAC CGCACGAGTG GGGCAGAGAA ATGACCCAAT GTCGGTTGTA
GATCCCCAGA CCTCGGTGAT TGGCGTCAGC AGTTTGCGCG TGGCAGACAG TTCGATTTTT
CCTTTGATTC CAAATGGAAA CCTGAACGCT CCATCAATTA TGGTCGGGGA AAAGGCCGCG
GATCACATCC TGGGTCGCCG TGTGCCCGCC GAGAATCTGA CGCCTTGGAT CGCACCGGAT
TGGCAGTCGA CACAACGGGA AAGCCATGCC GTAAAGGCTG CGGCTGAATA G
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| Protein sequence | MEADYVVIGA GSAGCAVTYR LAEAGKSVLV VEHGGSDWGP FINMPAALSY PMGMKRYDWG
YVTEPEPHMN NRVMACPRGK VVGGSSSING MIYVRGHARD FDTWAEMGAD GWSYADVLPY
FKRAETWHGD AGEPAFRGSD GPVHVTRGTR KNPLYQAFID AGMQAGYGAT DDYNGYRQEG
FGAFEMTVYK GKRWSAASAY LRPALAKPNC DMVRGLVQRI EFKEGRATGV RLADGSLIRV
RCEVVLCAGA INSPKILMLS GIGPAKHLAE HGISVVADRA GVGQNLQDHL EMYIQYAASK
PVSIAPYWSL WGKAAVGAQW LFTKTGLGAT NNFESCGFIR SSAGVEYPDI QYHFLPIAIR
YDGQMPPGGH GFQAHTGPMR SPSRGEITLR SQDPAQAPKI QFNYMSHEKD WRDFRRAIRL
TREIFATEPM AEYVDHEIQP GDAAQFDDAL DAVIREHAES AYHPCGTARV GQRNDPMSVV
DPQTSVIGVS SLRVADSSIF PLIPNGNLNA PSIMVGEKAA DHILGRRVPA ENLTPWIAPD
WQSTQRESHA VKAAAE
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